View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19877_low_11 (Length: 252)
Name: NF19877_low_11
Description: NF19877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19877_low_11 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 3568245 - 3568483
Alignment:
| Q |
14 |
gaatatggagaggttagaatgtttctatcttaataattgttccaattcaatctatttggccttcaagtatcttagttcaatttgttcaaatcacacacaa |
113 |
Q |
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| T |
3568245 |
gaatatggagaggttagaatgtttctatcttaataactgttccaattcaatctatttggccttcaagtatcttagttgaatttgttcaaatcacacacaa |
3568344 |
T |
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| Q |
114 |
gattctcatttttgtttattatttgcaatctttttgacatgcaaaagacgtgaatggtgattccttatgaattatgatagtgaaaactgaccttatggga |
213 |
Q |
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| T |
3568345 |
gattctcatttttgtttattatttgcaatctttttgacatgcaaaagacgtgaatggtgattccttatgaattaagatagtgaaaactgaacttatgtga |
3568444 |
T |
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| Q |
214 |
tatgttatatatagggacagaaccaaggactaaagattt |
252 |
Q |
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| T |
3568445 |
tatgttatatatagggacagaaccaaggactaaagattt |
3568483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 3576758 - 3576851
Alignment:
| Q |
14 |
gaatatggagaggttagaatgtttctatcttaataattgttccaattcaatctat-ttggccttcaagtatcttagttcaatttgttcaaatca |
106 |
Q |
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| T |
3576758 |
gaatatggagaggttaaaatttttctatcttaataattgttccaattcaatctatcttggccttcaagtaacgcagttcattttgtgcaaatca |
3576851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 3576910 - 3576995
Alignment:
| Q |
115 |
attctcatttttgtttattatttgcaatctttttgacatgcaaaagacgtgaatggtgattccttatgaattatgatagtgaaaac |
200 |
Q |
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| T |
3576910 |
attctcctttttgtttattatttgcaatatttgtgacattaaaaagaagtgaatggtgattccttatgagttatggttgtgaaaac |
3576995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 3601341 - 3601399
Alignment:
| Q |
115 |
attctcatttttgtttattatttgcaatctttttgacatgcaaaagacgtgaatggtga |
173 |
Q |
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| T |
3601341 |
attctcatttttgtttattatttgcaatttttgtgacatgaaaaagaagtgaatggtga |
3601399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 14340211 - 14340269
Alignment:
| Q |
115 |
attctcatttttgtttattatttgcaatctttttgacatgcaaaagacgtgaatggtga |
173 |
Q |
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| T |
14340211 |
attctcattttggtttattatttgcaatttttgtgacatgaaaaagaagtgaatggtga |
14340269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 1408514 - 1408566
Alignment:
| Q |
69 |
ttggccttcaagtatcttagttcaatttgttcaaatcacaca-caagattctc |
120 |
Q |
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| T |
1408514 |
ttggtcttcaagtatctcagttcattttgttcaaatcacacaccaagattctc |
1408566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 1408617 - 1408654
Alignment:
| Q |
124 |
tttgtttattatttgcaatctttttgacatgcaaaaga |
161 |
Q |
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| T |
1408617 |
tttgtttattatttgcaatctttgtgacatgaaaaaga |
1408654 |
T |
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