View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19877_low_17 (Length: 208)
Name: NF19877_low_17
Description: NF19877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19877_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 39259624 - 39259456
Alignment:
| Q |
18 |
gatgtaacacggaccaagatggacttagagatgaaccctaattcatctaaacataaggctgaaataagtcaagtatct--caactagatgccaaatccta |
115 |
Q |
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| T |
39259624 |
gatgtaacacggaccaagatggacttagagatgaaccctaattcatctaaacataaggctgaaataagtcaagtatcttacaactagatgccaaatccta |
39259525 |
T |
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| Q |
116 |
gagaaaaccctataaggtttctctgttcttgtaaagagcctattgaaaatgcaaataaaggttcacctc |
184 |
Q |
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| T |
39259524 |
gagaaaaccctataaggtttctctgttcttgtaaagagcctattgaaaatgcaaataaaggttcacctc |
39259456 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 39250118 - 39250030
Alignment:
| Q |
38 |
ggacttagagatgaaccctaattcatctaaacataaggctgaaataagtc-aagtatct--caactagatgccaaatcctagagaaaac |
123 |
Q |
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| T |
39250118 |
ggacatagagatgaaccatgcttcatctaacgataagactgaaataagtcaaagcatctcacaactagatgtcatatcctagagaaaac |
39250030 |
T |
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