View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19877_low_4 (Length: 331)
Name: NF19877_low_4
Description: NF19877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19877_low_4 |
 | |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0957 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 8570012 - 8570130
Alignment:
| Q |
211 |
cagatatctctctcatagaatcacttttctcataagggctttatcccaaaatcgcttagtcaaaattgcttaatcaaaatctcttcatgacatctcctca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8570012 |
cagatatctctctcatagaatcacttttctcagaagggctttatcccaaaatcgctttgtcaaaattgcttaatcaaaatctcttcatgacatctcctca |
8570111 |
T |
|
| Q |
311 |
tcagtttcatttcaatcac |
329 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
8570112 |
tcagtttcatttcaatcac |
8570130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 54189201 - 54189081
Alignment:
| Q |
211 |
cagatatctctctcatagaatcacttttctcataagggctttatcccaaaatcgcttagtcaaaattgcttaatcaaaatctcttcatgacatctcctca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54189201 |
cagatatctctctcatagaatcacttttctcagaagggctttatcccaaaatagctttgtcaaaattgcttaatcaaaatctcttcatgacatctcctca |
54189102 |
T |
|
| Q |
311 |
tcagtttcatttcaatcactc |
331 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
54189101 |
tcagtttcatttcaatcactc |
54189081 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 54189394 - 54189271
Alignment:
| Q |
17 |
actactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattattttcaatattataaaaataacat |
116 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
54189394 |
actacgacacatataaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattattttcaatattataaaaataatat |
54189295 |
T |
|
| Q |
117 |
ttaaactatagttttatttcaccc |
140 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
54189294 |
ttaaactacagttttatttcaccc |
54189271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 8569818 - 8569942
Alignment:
| Q |
17 |
actactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaatta-ttttcaatattataaaaataaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
8569818 |
actactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattatttttcaatattataaaaataaca |
8569917 |
T |
|
| Q |
116 |
tttaaactatagttttatttcaccc |
140 |
Q |
| |
|
|||||||| || |||||||||||| |
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|
| T |
8569918 |
tttaaacttcagatttatttcaccc |
8569942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 28695972 - 28696090
Alignment:
| Q |
211 |
cagatatctctctcatagaatcacttttctcataagggctttatcccaaaatcgcttagtcaaaattgcttaatcaaaatctcttcatgacatctcctca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28695972 |
cagatatctctctcatagaatcacttttctcagaagggctttatcccaaaatcgctttgtcaaaattgcttaatcaaaatctcttcatgacatctcctca |
28696071 |
T |
|
| Q |
311 |
tcagtttcatttcaatcac |
329 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
28696072 |
tcagtttcatttcaatcac |
28696090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 28695779 - 28695902
Alignment:
| Q |
17 |
actactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaatta-ttttcaatattataaaaataaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28695779 |
actactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattatttttcaatattataaaaataaca |
28695878 |
T |
|
| Q |
116 |
tttaaactatagttttatttcacc |
139 |
Q |
| |
|
|||||||| || ||||||||||| |
|
|
| T |
28695879 |
tttaaacttcagatttatttcacc |
28695902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 3368291 - 3368174
Alignment:
| Q |
211 |
cagatatctctctcatagaatcacttttctcataagggctttatcccaaaatcgcttagtcaaaattgcttaatcaaaatctcttcatgacatctcctca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3368291 |
cagatatctctctcatagaatcacttttct---aagggctttatcccaaaatagtttagtcaaaattgcttaatcaaaatctcttcatgacatctcctca |
3368195 |
T |
|
| Q |
311 |
tcagtttcatttcaatcactc |
331 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3368194 |
tcagtttcatttcaatcactc |
3368174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 9891946 - 9891823
Alignment:
| Q |
211 |
cagatatctctctcatagaatcacttttctcataagggc---tttatcccaaaatcgcttagtcaaaattgcttaatcaaaatctcttcatgacatctcc |
307 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||| || |||||||||| |||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
9891946 |
cagatatctctctcatcaaatcatttttctcagaagcgccgctttatcccaattacgcttagtcaaaatcgcttaatcaaaatcgcttcatgacatcatt |
9891847 |
T |
|
| Q |
308 |
tcatcagtttcatttcaatcactc |
331 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9891846 |
tcatcagtttcatttcaatcactc |
9891823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 24511519 - 24511458
Alignment:
| Q |
17 |
actactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacat |
78 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24511519 |
actactacacatatgaccttttgcaacatattatatgtgacattttttaaaaagtgttacat |
24511458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 25035961 - 25035900
Alignment:
| Q |
17 |
actactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacat |
78 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25035961 |
actactacgcatatgactttttgcaacatcttatatgtgacattttttagaaagtgttacat |
25035900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 17039454 - 17039399
Alignment:
| Q |
14 |
tatactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaa |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17039454 |
tatactactacacatatgaccttttgcaacatcttatatgtgacatattttaaaaa |
17039399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 14417643 - 14417581
Alignment:
| Q |
17 |
actactacacatatgaccttttgcaacatcttatatgtgacatt-ttttaaaaagtgttacat |
78 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
14417643 |
actactacacatatgaagttttgcaacatcttttatgtgacatttttttaaaaagtgttacat |
14417581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 43532068 - 43532021
Alignment:
| Q |
22 |
tacacatatgaccttttgcaacatcttatatgtgacattttttaaaaa |
69 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
43532068 |
tacacgtatgactttttgcaacatcttatatgtgacattttataaaaa |
43532021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0957 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0957
Description:
Target: scaffold0957; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 3071 - 3112
Alignment:
| Q |
17 |
actactacacatatgaccttttgcaacatcttatatgtgaca |
58 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
3071 |
actactacacataagacattttgcaacatcttatatgtgaca |
3112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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