View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19877_low_9 (Length: 262)
Name: NF19877_low_9
Description: NF19877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19877_low_9 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 53277723 - 53277923
Alignment:
| Q |
14 |
caaaggcaaaatcgatccatccaatggaaccgttccagcttcactcatacttgagaaccgcgaattcgttatgatcttaacaacttcaatcgctgttctc |
113 |
Q |
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| T |
53277723 |
caaaggcaaaatcgatccatccaatggaaccgttccagcttcactcatacttgagaaccgcgaattcgttatgatcttaacaacttcaatagctgttctc |
53277822 |
T |
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| Q |
114 |
atcggttgtgtcgtcgttttaatttggcgtagatccaattctcaaaaaccaaaaccaattgaagttcctaaacgcgttatcgagaaacttcctgaacttg |
213 |
Q |
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| T |
53277823 |
atcggttgcgtcgtcgttttaatttggcgtagatccaattctcaaaaaccaaaaccaattgaagttcctaaacgcgttatcgagaaacttcctgaacttg |
53277922 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
53277923 |
a |
53277923 |
T |
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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 93852 - 93781
Alignment:
| Q |
116 |
cggttgtgtcgtcgttttaatttggcgtagatccaattctcaaaaaccaaaaccaattgaagttcctaaacg |
187 |
Q |
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| T |
93852 |
cggttgtgtcatcgtataaatattgcgcagatctaattctcaaaactcaaaaccaattgaagttgctaaacg |
93781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 7103511 - 7103467
Alignment:
| Q |
144 |
agatccaattctcaaaaaccaaaaccaattgaagttcctaaacgc |
188 |
Q |
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| T |
7103511 |
agatctaattctcaaaactcaaaaccaattgaagttgctaaacgc |
7103467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 7631139 - 7631183
Alignment:
| Q |
144 |
agatccaattctcaaaaaccaaaaccaattgaagttcctaaacgc |
188 |
Q |
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| T |
7631139 |
agatctaattctcaaaactcaaaaccaattgaagttgctaaacgc |
7631183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 9658292 - 9658248
Alignment:
| Q |
144 |
agatccaattctcaaaaaccaaaaccaattgaagttcctaaacgc |
188 |
Q |
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| T |
9658292 |
agatctaattctcaaaactcaaaaccaattgaagttgctaaacgc |
9658248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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