View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_102 (Length: 254)
Name: NF19878_high_102
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_102 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 19856086 - 19856326
Alignment:
| Q |
14 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856086 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
19856185 |
T |
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| Q |
114 |
cattcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856186 |
cattcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcgg |
19856285 |
T |
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| Q |
214 |
aatatgcttgtcaccaaccataacatcatgaacagctaaac |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856286 |
aatatgcttgtcaccaaccataacatcatgaacagctaaac |
19856326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 8748551 - 8748312
Alignment:
| Q |
14 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
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| T |
8748551 |
agatgaacagaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatg-tgctaacgtcaaatcagatcccattatactcacttcct |
8748453 |
T |
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| Q |
114 |
cattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttc |
211 |
Q |
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|||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8748452 |
cattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatagcagttgtacctttc |
8748353 |
T |
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| Q |
212 |
ggaatatgcttgtcaccaaccataacatcatgaacagctaa |
252 |
Q |
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|||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
8748352 |
ggaacatgcttctcacctaccataacatcatgaacagctaa |
8748312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 35081140 - 35080901
Alignment:
| Q |
14 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
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| T |
35081140 |
agatgaacagaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatg-tgctaacgtcaaatcagatcccattatactcacttcct |
35081042 |
T |
|
| Q |
114 |
cattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttc |
211 |
Q |
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||||||||||||||||| |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35081041 |
cattcataaacctctctcgcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatagcagttgtacctttc |
35080942 |
T |
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| Q |
212 |
ggaatatgcttgtcaccaaccataacatcatgaacagctaa |
252 |
Q |
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|||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
35080941 |
ggaacatgcttctcacctaccataacatcatgaacagctaa |
35080901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 98 - 254
Target Start/End: Original strand, 39427880 - 39428038
Alignment:
| Q |
98 |
attatactcacatcctcattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccat |
195 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||||| ||||||||||| |
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| T |
39427880 |
attatactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttatagcccatatattcaccat |
39427979 |
T |
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| Q |
196 |
agcagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaac |
254 |
Q |
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|||||||||||||||||||| |||||| ||||| |||||||||||||||||| |||||| |
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| T |
39427980 |
agcagttgtacctttcggaacatgcttctcacctaccataacatcatgaacaactaaac |
39428038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 32830282 - 32830523
Alignment:
| Q |
14 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
113 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||| |
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| T |
32830282 |
agatgaacaaaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacgtcaaatcatatcccattgtactcacttcct |
32830381 |
T |
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| Q |
114 |
cattcataaacctctctggc--ttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttc |
211 |
Q |
| |
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|||||||||||||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
32830382 |
cattcataaacctctctggcttttaaactcttttgcctcattgtaaaccttctcatcatgtgttatagcccacatattcaccataccagttgtacctttc |
32830481 |
T |
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| Q |
212 |
ggaatatgcttgtcaccaaccataacatcatgaacagctaaa |
253 |
Q |
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|||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
32830482 |
ggaacatgcttctcacctaccataacatcatgaacagctaaa |
32830523 |
T |
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