View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_104 (Length: 250)
Name: NF19878_high_104
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_104 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 48014331 - 48014572
Alignment:
| Q |
1 |
tatgtcaatctatgaatgccaactcgcctaaacttttttattaccaaagtggctcaataaaaacatctcacatatttaagtgttttgaactaattcatgg |
100 |
Q |
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| T |
48014331 |
tatgtcaatctatgaatgccaactcgcctaaacttttttattatcaaagtggctcaataaaaacatctcacatatttaagtgttttgaactaattcatgg |
48014430 |
T |
|
| Q |
101 |
cctcacccaacaagacaacatggtccaatctgcacagtgatgctcgagtcatcatggatgcacaatgtaaccacaatgcatcgctctgagccgaattagg |
200 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48014431 |
cctcacccaacaagacaacatggtccaatatgcacaatgatgctcgagtcatcatggatgcacaatgtaaccacaatgtatcgctctgagccgaattagg |
48014530 |
T |
|
| Q |
201 |
accctctggctatccactcaacttttatattggattcatctc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
48014531 |
accctctggctatccactcaacttttatattggattcatctc |
48014572 |
T |
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