View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_high_11 (Length: 587)
Name: NF19878_high_11
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 32 - 446
Target Start/End: Complemental strand, 11038953 - 11038538
Alignment:
| Q |
32 |
tcttttcactaattctcaattaggagtgcttgtataaccatttattcatttgtttagtgaagaactgaagatagtggaagcagtacctttcatgctctaa |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
11038953 |
tcttttcactaattctcaattaggagtgcttgtataaccatttattcatttgtttagtgaagaactggagatagtggaagcagtacctatcatgctctaa |
11038854 |
T |
|
| Q |
132 |
atcctttagagttaagcacattcgagttagtgttccctcatgtaattgaagaacaaactatttactactaatcaagaatacatctaatgtatgctttgtc |
231 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11038853 |
atcctttaaagttaagcacattcgagttagtgttccctcatgtaattgaagaacaaactatttactactaatcaagaatacatctaatgtatgctttgtc |
11038754 |
T |
|
| Q |
232 |
atagactgttgttggttagtctgacaaatttaacatctaatgtaagatatttattgaacttaccgatgattaattttcaccaataaatctggttgaccac |
331 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11038753 |
atagacattagttggttagtccgacaaatttaacatctaatgtaagatatttattgaacttaccgatgattaattttcaccaataaatctggttgaccac |
11038654 |
T |
|
| Q |
332 |
-tttggtaatatcttctcttccaactatattttttctacaacattgctatatccagcaaatagaattgtctcaaaattgtcccgaaagaaaaattagcca |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11038653 |
ttttggtaatatcttctcttccaactatattttttctacaacattgctatatccagcgaatagaattgtctcaaaattgtcccgaaagaaaaattagcca |
11038554 |
T |
|
| Q |
431 |
atgacaagaaaggact |
446 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11038553 |
atgacaagaaaggact |
11038538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University