View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_111 (Length: 243)
Name: NF19878_high_111
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_111 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 471150 - 470932
Alignment:
| Q |
9 |
aacagaacttaacaatgaacaaacacaatttccaaaccaagcaatgaaaccaatagctttatgagctttgagaagtaaaacccatgtgaattgtttagca |
108 |
Q |
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| T |
471150 |
aacagaacttaacaatgaacaaacacaatttccaaaccaagcaatgaaaccaatagctttatgagctttgagaagtaaaacccatgtgaattgtttagca |
471051 |
T |
|
| Q |
109 |
tttctggttctatctttctcaactggttgaaatgctgaatcaggaccatttatttgaaggactgagtaatttggatttcccatagtaacaacaacagggt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
471050 |
tttctggttctatctttctcaactggttgaaatgctgaatcaggaccatttatttgaagcactgagtaatttggatttcccatagtaacaacaacagggt |
470951 |
T |
|
| Q |
209 |
taccacctttctttgaagt |
227 |
Q |
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||||||||||||||||||| |
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| T |
470950 |
taccacctttctttgaagt |
470932 |
T |
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