View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_high_123 (Length: 227)
Name: NF19878_high_123
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_123 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 32863112 - 32863338
Alignment:
| Q |
1 |
aatttcttttttattttgttagaatataaaggctgttcatcttcatccttagcttgaaaagttggtttatttctgtagattgtctcgacaaatttggttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32863112 |
aatttcttttttattttgttagaatataaaggctgttcatcttcatccttagcttgaaaagttggtttatttctgtagattgtctcgacaaatttggttg |
32863211 |
T |
|
| Q |
101 |
gttctatcctttgtacccgagaagccatgcgtattatgagaaaccaaaccaagccaggccacatatttaatatggacggtgcaggttctggaggctctag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32863212 |
gttctatcctttgtacccgagaagccatgcgtattatgagaaaccaaaccaagccaggccacatatttaatatggacggtgcaggttctggaggctctag |
32863311 |
T |
|
| Q |
201 |
cacacctctgacagccgtgtgagtatt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
32863312 |
cacacctctgacagccgtgtgagtatt |
32863338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University