View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_130 (Length: 218)
Name: NF19878_high_130
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_130 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 43105136 - 43104925
Alignment:
| Q |
1 |
tattctctagggtataac-cactttcattttttctgtcaagtagcgtatcggctagagaaatacatgcaccttaaatatgaatgaataagaaaagaagaa |
99 |
Q |
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| T |
43105136 |
tattctcttgggtataactcactttcattttttctatcaagtagcgtatcggctagagaaatccatgcaccttaaatgtgaatgaataagaaaagaa--- |
43105040 |
T |
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| Q |
100 |
ctcactttcactttttctatattgcatatacaatgtacttagtataagagaaattaaggtgaataaaatggaagagaaaattttcttccattttcactca |
199 |
Q |
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| T |
43105039 |
----ctttcactttttctatattgcatatacaatgtacttagtatgagagaaattaaggtgaataaaatggaagagaatattttcttccattttcactca |
43104944 |
T |
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| Q |
200 |
ctttataatatatgctttt |
218 |
Q |
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| T |
43104943 |
ctttataatatatgctttt |
43104925 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 46569951 - 46569991
Alignment:
| Q |
22 |
tttcattttttctgtcaagtagcgtatcggctagagaaata |
62 |
Q |
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| T |
46569951 |
tttcattttttttgtcaagtagcctagcggctagagaaata |
46569991 |
T |
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