View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_17 (Length: 541)
Name: NF19878_high_17
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Complemental strand, 43461928 - 43461415
Alignment:
| Q |
11 |
aagaatattatgatagccgcagttgaaggctctgcatgatactcgtttagcaggtacaaaaccatgttcacatgaagtcctacatttgcaaccttctcaa |
110 |
Q |
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| T |
43461928 |
aagaatattatgatagccgcagttgaaggctctgcatgatactcgtttagcaggtacaaaaccatgttcacatgaagtcctacatttgcaaccttctcaa |
43461829 |
T |
|
| Q |
111 |
aagtctcatttgctaaaatatatcaataaaaaacaagttagaaaatcataacctttttgttagaacaatnnnnnnnntatgtataccaaagtaaaatcca |
210 |
Q |
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| T |
43461828 |
aagtctcatttgctaaaatatatcaataaaaaacaagttagaaaatcataacctttttgttagaacaataaaaaaa-tatgtataccaaagtaaaatcca |
43461730 |
T |
|
| Q |
211 |
tgattattaatacaattaatatgttattaatatatgaaataagtagtaaaaatgtcctatataaaaatgaaggggtcatcacctatgataaagggcattg |
310 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43461729 |
tgattattaatacagttaatatgttattaatatatgaaataagtagtaaaaatgtcctatatagaaatgaaggggtcatcacctatgataaagggcattg |
43461630 |
T |
|
| Q |
311 |
ttctataaccaccctttttcctttcaacatgttcagtggctttgttttgctccattgacatctccattttccttctactacacaagtctatgttataaac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43461629 |
ttctataaccaccctttttcctttcaacatgttcagtgtctttgttttgctccattgacatctccattttccttctactacacaagtctatgttataaac |
43461530 |
T |
|
| Q |
411 |
aaaatataattgagttgctagttattcattacaatagaatagatatgtttaaagcactatatatacgtatatggacaagaattacctcaccttgttacaa |
510 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43461529 |
aaaatataattgagttgctagttattcaatacaatagaatagatatgtttaaagcactatatatacgtatatggacaagaattatctcaccttgttacaa |
43461430 |
T |
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| Q |
511 |
gtagacctcgttctt |
525 |
Q |
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||||||||||||||| |
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| T |
43461429 |
gtagacctcgttctt |
43461415 |
T |
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