View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_high_19 (Length: 519)
Name: NF19878_high_19
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 195 - 509
Target Start/End: Original strand, 2510306 - 2510637
Alignment:
| Q |
195 |
tataaaaaacccatattaattaaaatcattcaatattgttgacaattgaaaaagaaatttgacaa-----------------caattgtccaaaaaatgt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2510306 |
tataaaaaacccatattaattaaaatcattcaatattgttgacaattgaaaaagaaatttgacaaaatcttgaactctacaacaattgtccaaaaaatgt |
2510405 |
T |
|
| Q |
278 |
caacaaatctttccacttcattaaatgtatgtgagagtgtctcttggatggttgtcgtcaactatatgacatggaaaacaatggtgtaaaatacaagatg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2510406 |
caacaaatctttccacttcattaaatgtatgtgagagtgtctcttggatggttgtcgtcaactatatgacatggaaaacaatggtgtaaaatacaagatg |
2510505 |
T |
|
| Q |
378 |
catatttgtgcaaagaatgaaaataataatattcatgaaggaaggttatggataaatcccagactctattttcaaatttttgcatttgcctatctcttta |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2510506 |
catatttgtgcaaagaatgaaaataataatattcatgaaggaaggttatggataaatccgagactctattttcaaatttttgcatttgcctatctcttta |
2510605 |
T |
|
| Q |
478 |
tatgttctcatgtcttaaattgcacttatatt |
509 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
|
|
| T |
2510606 |
tatgttctcatgtcttaaattgtacttatatt |
2510637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 2509854 - 2510023
Alignment:
| Q |
25 |
cttaatcatccacagttatttaaactacctctacgcaatgaatgtacaactaggaggagctcagaatcatttatatcaaactttttagaaaagtttgatg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2509854 |
cttaatcatccacagttatttaaactacctctacgcaatgaatgtacaactaggaggagctcagaatcatttatatcaaactttttagaaaagtttgatg |
2509953 |
T |
|
| Q |
125 |
tttgtttgtaaactttttcgttgtatccaacgattgcatttaatactataaaattgatctacacgtaaat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2509954 |
tttgtttgtaaactttttcgttgtatccaacgattgcatttaatactataaaattgatctacacgtaaat |
2510023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University