View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_22 (Length: 494)
Name: NF19878_high_22
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 298 - 481
Target Start/End: Original strand, 33514293 - 33514476
Alignment:
| Q |
298 |
ctgattggtgtaggtgaggnnnnnnnccataaaaggcagcggagaagaaatataccaaacagagcttgtacaattattttcggaagaggatgaggtaagc |
397 |
Q |
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| T |
33514293 |
ctgattggtgtaggtgaggaaaaaaaccataaaaggcagcggagaagaaatataccaaacagagcttgtacaattattttcggaagaggatgaggtaggc |
33514392 |
T |
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| Q |
398 |
ttcataacttcttgtatttacatctttggacttacatcaatatatatatgtgtgtgtgaaatatcctttttactattcacaggt |
481 |
Q |
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| T |
33514393 |
ttcataacttcttgtatttacatttttggacttacatcaatatatatatgtgtgtgtgaaatatcctttttactattcacaggt |
33514476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 33514052 - 33514141
Alignment:
| Q |
88 |
tgtgattgtctctctattagcaccagaaatggtgtacatatataattctaaaataagcagcataatttttatttttgaagagtgagcagc |
177 |
Q |
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| T |
33514052 |
tgtgattgtctctctattagcaccagaaatggtgtacatatataattctaaaataagcagcataatttttatttttgaagagtgagcagc |
33514141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 33514015 - 33514066
Alignment:
| Q |
18 |
ctcacgaaagcaagcaaattaaaatagctgtctcatttgtgattgtctctct |
69 |
Q |
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| T |
33514015 |
ctcacgaaagcgagcaaattaaaatagctgtctcatttgtgattgtctctct |
33514066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 44064166 - 44064118
Alignment:
| Q |
358 |
agagcttgtacaattattttcggaagaggatgaggtaagcttcataact |
406 |
Q |
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| T |
44064166 |
agagcttgtgcaatttttttcggaggaggatgaggtaggcttcataact |
44064118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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