View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_23 (Length: 485)
Name: NF19878_high_23
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 10 - 470
Target Start/End: Original strand, 38612563 - 38613022
Alignment:
| Q |
10 |
gcataggttgttttcatttgttctctctgtaaatgagatttgctgattacgttaatgacgtattggcgtaactatgcgattctaatttgtaagcaactcg |
109 |
Q |
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| T |
38612563 |
gcataggttgttttcatttgttctctctgtaaatgagatttgctgattacgttaatgacgtattggcgtaactatgcgattctaatttgtaagcaactcg |
38612662 |
T |
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| Q |
110 |
ttaatcatatgttatctttgtttttacatagaaattgaggtattcaattatgatctacaatggaagagtagcttgtgtgtttctttatgatttcttgttt |
209 |
Q |
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| T |
38612663 |
ttaatcatatgttatctttgtttttacatagaaattgaggtattcaattatgatctacaatggaagagtagcttgtgtgtttctttatgatttcttgttt |
38612762 |
T |
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| Q |
210 |
tttgacctattaatgttgcaattgtttactaacttcagttttgcaaatatgggagtcgtgattatctgtgcaatttatcttttgacgcttctctcgaaaa |
309 |
Q |
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| T |
38612763 |
tttgacctattaatgttgcaattgtttactaacttcagttttgcaaatatggtagtcgtgattatctgtgcaatttatcttttgatgtttctctcgaaaa |
38612862 |
T |
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| Q |
310 |
caaatttagttagtgttagcccctttgttgcatcgacatttctgatctaaggcatgtttggtgtccgaccccgacacatgcgagtgcattcagttaattc |
409 |
Q |
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| T |
38612863 |
caaatttagttagtgttagcccctttgtagcatcgacatttctgatctaaggcatgtttggtgtccga-cacgacacatgcgagtacattcagttaattc |
38612961 |
T |
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| Q |
410 |
attttctataattattatgctagcatgggtgtcgcatccggtgtttgtgtaggtacttcat |
470 |
Q |
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| T |
38612962 |
attttctataattattatgctagcgtgggtgtcgcatccggtgtttgtgtaggtacttcat |
38613022 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 6424171 - 6424239
Alignment:
| Q |
343 |
cgacatttctgatctaaggcatgtttggtgtccgaccccgacacatgcgagtgcattcagttaattcat |
411 |
Q |
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| T |
6424171 |
cgacaattctgatcgaaggcatgtttggtgtctgacaccgacacatgtgattgcattgaattaattcat |
6424239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 6294544 - 6294588
Alignment:
| Q |
383 |
acacatgcgagtgcattcagttaattcattttctataattattat |
427 |
Q |
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| T |
6294544 |
acacatgcgattgcattcaattaattcattttctcaaattattat |
6294588 |
T |
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