View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_high_25 (Length: 479)

Name: NF19878_high_25
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19878_high_25
NF19878_high_25
[»] chr7 (5 HSPs)
chr7 (1-463)||(3315520-3315982)
chr7 (5-150)||(3334072-3334216)
chr7 (176-317)||(3334484-3334625)
chr7 (19-108)||(23661699-23661788)
chr7 (65-315)||(3553049-3553299)
[»] chr4 (4 HSPs)
chr4 (30-262)||(9596451-9596681)
chr4 (281-457)||(9597005-9597181)
chr4 (70-309)||(7223709-7223947)
chr4 (73-315)||(7220749-7220990)
[»] chr2 (8 HSPs)
chr2 (71-262)||(29232305-29232496)
chr2 (71-262)||(29345604-29345795)
chr2 (19-233)||(34566178-34566392)
chr2 (61-293)||(18062444-18062676)
chr2 (19-190)||(16074224-16074395)
chr2 (341-391)||(18062339-18062389)
chr2 (273-311)||(29232218-29232256)
chr2 (273-311)||(29345517-29345555)
[»] chr1 (2 HSPs)
chr1 (269-463)||(34497328-34497522)
chr1 (13-203)||(16634814-16635003)
[»] chr8 (1 HSPs)
chr8 (30-247)||(18916520-18916738)
[»] chr3 (2 HSPs)
chr3 (62-315)||(2905973-2906227)
chr3 (62-145)||(4816558-4816641)
[»] chr6 (1 HSPs)
chr6 (328-434)||(19622485-19622597)


Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 3315520 - 3315982
Alignment:
Q  1 gctataaactggtcatatttttggcacaattgaaagcatgtagttatttatctttcttagaacactcaaggtccttttataggagatttgaatagagccg 100  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  3315520 gctataaactagtcatatttttggcacagttgaaagcatgtagttatctatctttcttagaacactcaaggtccttttatatgagatttgaatagagcca 3315619  T
Q  101 ttgtttgacgagagtgcttgcacatcaagcttccttgagaagttttcttatgatttcaaatattttcctcttaaagataattttgttgaatagtacttta 200  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |    
T  3315620 ttgtttgacgagagtgctagcacatcaagcttccttgagaaattttcttatgatttcaaatattttcctcttaaggataattttgttgaacagtacttca 3315719  T
Q  201 gaaatcctttatttctttggaaatgataagttgcatcaactttgtctcttacaaagatttgtctgctcttgcaacatgtcttcttttaattcatcaagga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  3315720 gaaatcctttatttctttggaaatgataagttgcatcaactttgtctcttacagagatttgtctgctcttgcaatgtgtcttcttttaattcatcaagga 3315819  T
Q  301 caaaacgtattactgtcctatgggcagtgacttttcttcagaagaggacaaaagtgggtcagatgttcatcagagcattaaccattgactttagatcaga 400  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3315820 caaaaagtattactgtcctataggcagtgacttttctttagaagaggacaaaagtgggtcagatgttcatcagagcattaaccattgactttagatcaga 3315919  T
Q  401 gcttcatcttcacaacttgataaatacttgatcagaacatttattttcattgaccctattcat 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3315920 gcttcatcttcacaacttgataaatacttgatcagaacatttattttcattgaccctattcat 3315982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 3334072 - 3334216
Alignment:
Q  5 taaactggtcatatttttggcacaattgaaagcatgtagttatttatctttcttagaacactcaaggtccttttataggagatttgaatagagccgttgt 104  Q
    |||| ||||||||||||||  |||||||||||||||||| | ||||||||||||  ||||| ||||||| |||||||| | |||||||| ||| ||||||    
T  3334072 taaattggtcatatttttgtaacaattgaaagcatgtaggtctttatctttcttcaaacac-caaggtcattttatagaaaatttgaatcgagtcgttgt 3334170  T
Q  105 ttgacgagagtgcttgcacatcaagcttccttgagaagttttctta 150  Q
    |||| || |||||  |||||||||||||||||||||||||||||||    
T  3334171 ttgaagatagtgccagcacatcaagcttccttgagaagttttctta 3334216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 3334484 - 3334625
Alignment:
Q  176 gataattttgttgaatagtactttagaaatcctttatttctttggaaatgataagttgcatcaactttgtctcttacaaagatttgtctgctcttgcaac 275  Q
    ||||||| | ||||||||||||| |||||| | ||  |||||||||||||||   ||||||| ||||| |||||| || ||||||||  | | |||||||    
T  3334484 gataattatattgaatagtacttcagaaattcgttgcttctttggaaatgatctattgcatccactttatctcttgcagagatttgtacgttattgcaac 3334583  T
Q  276 atgtcttcttttaattcatcaaggacaaaacgtattactgtc 317  Q
     | ||||||||||||||||||  ||||| | |||||| ||||    
T  3334584 ttatcttcttttaattcatcattgacaataagtattattgtc 3334625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 23661699 - 23661788
Alignment:
Q  19 ttttggcacaattgaaagcatgtagttatttatctttcttagaacactcaaggtccttttataggagatttgaatagagccgttgtttga 108  Q
    ||||||||||||||||||||  || || ||| ||||||||  ||| ||||| ||  ||||||| ||||||||||||||||| ||||||||    
T  23661699 ttttggcacaattgaaagcacttaattgtttctctttcttcaaacgctcaatgtaattttataagagatttgaatagagccattgtttga 23661788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 315
Target Start/End: Complemental strand, 3553299 - 3553049
Alignment:
Q  65 ctcaaggtccttttataggagatttgaatagagccgttgtttgacgagagtgcttgcacatcaagcttccttgagaagttttcttatgatttcaaatatt 164  Q
    |||| |||| ||||||||||||||||||||||| | |||||||| |||| |    |  |||||||||| ||| ||||||||||||   |||| |||| ||    
T  3553299 ctcatggtcattttataggagatttgaatagagtcattgtttgaagagactctaagagcatcaagctttcttaagaagttttcttcatatttaaaatgtt 3553200  T
Q  165 ttcctcttaaagataattttgttgaatagtactttagaaatcctttatttctttggaaatgataagttgcatcaactttgtctcttacaaagatttgtct 264  Q
    | |||||||| |||||||   || |||| ||||||| || || |||  |||||| | ||||||  ||||| || | |||||||   | |||| |||||||    
T  3553199 tgcctcttaaggataattccattaaataatactttataattcatttgcttctttaggaatgatctgttgcttccattttgtcttacataaaggtttgtct 3553100  T
Q  265 gctcttgcaacatgtcttcttttaattcatcaaggacaaaacgtattactg 315  Q
    | |  | ||   |||||| |||||||||| |||||||||||| || |||||    
T  3553099 gtttctacagtgtgtcttgttttaattcaccaaggacaaaacatactactg 3553049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 9596451 - 9596681
Alignment:
Q  30 ttgaaagcatgtagttatttatctttcttagaacactcaaggtccttttataggagatttgaatagagccgttgtttgacgagagtgcttgcacatcaag 129  Q
    |||||||||||||| | | |||||||||| |||||||||||| |||||||||||| ||||||||||||   ||||||||  |||||||| ||||||  ||    
T  9596451 ttgaaagcatgtaggtctctatctttcttcgaacactcaaggaccttttataggatatttgaatagagttattgtttgaaaagagtgctggcacat--ag 9596548  T
Q  130 cttccttgagaagttttcttatgatttcaaatattttcctcttaaagataattttgttgaatagtactttagaaatcctttatttctttggaaatgataa 229  Q
    ||| ||||||||||||||||| |||||||||||||  ||| |||| ||||||||  || |||||||||| |||||||   |  |||||||||||||||      
T  9596549 cttgcttgagaagttttcttaagatttcaaatattgaccttttaaggataatttcattaaatagtacttcagaaatctactgcttctttggaaatgatct 9596648  T
Q  230 gttgcatcaactttgtctcttacaaagatttgt 262  Q
    || ||||| | ||||| | ||||| ||||||||    
T  9596649 gtggcatccaatttgtttattacagagatttgt 9596681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 281 - 457
Target Start/End: Original strand, 9597005 - 9597181
Alignment:
Q  281 ttcttttaattcatcaaggacaaaacgtattactgtcctatgggcagtgacttttcttcagaagaggacaaaagtgggtcagatgttcatcagagcatta 380  Q
    |||||||||||||||| |||||||| ||| || | || ||| | || ||||  ||||| | |||| ||||||||| |||||||||||||||| ||  ||     
T  9597005 ttcttttaattcatcatggacaaaaagtactaatttcatatagacaatgacaattctttaaaagaagacaaaagtcggtcagatgttcatcatagtgttg 9597104  T
Q  381 accattgactttagatcagagcttcatcttcacaacttgataaatacttgatcagaacatttattttcattgaccct 457  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| |||| |||||||||||||||    
T  9597105 accattgactttagatcagagcttcgtcttcacaacttgatgaatatttgatcagagcattaattttcattgaccct 9597181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 70 - 309
Target Start/End: Original strand, 7223709 - 7223947
Alignment:
Q  70 ggtccttttataggagatttgaatagagccgttgtttgacgagagtgcttgcacatcaagcttccttgagaagttttcttatgatttcaaatattttcct 169  Q
    |||||||||||||  ||||||||||||| |||||||| | |||||| |  || |||||||||||| ||||||||||||||  |||||||||| ||| |||    
T  7223709 ggtccttttatagatgatttgaatagagtcgttgttttaagagagt-caagcgcatcaagcttccatgagaagttttcttcagatttcaaatctttgcct 7223807  T
Q  170 cttaaagataattttgttgaatagtactttagaaatcctttatttctttggaaatgataa--gttgcatcaactttgtctcttacaaagatttgtctgct 267  Q
      ||||||||||||||||||||| ||||| | || |  |||  ||||||||||||||||   ||||||||   ||||||| | | | || |||||||| |    
T  7223808 --taaagataattttgttgaataatacttaataatttatttgcttctttggaaatgatatatgttgcatccgatttgtctttcatataggtttgtctgtt 7223905  T
Q  268 cttgcaacatgtcttcttttaattcatcaaggacaaaacgta 309  Q
      |||||||||||||||||||||||| ||| |||||||||||    
T  7223906 tctgcaacatgtcttcttttaattcagcaatgacaaaacgta 7223947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 315
Target Start/End: Original strand, 7220749 - 7220990
Alignment:
Q  73 ccttttataggagatttgaatagagccgttgtttgacgagagtgcttgcacatcaagcttccttgagaagttttcttatgatttcaaatattttcctctt 172  Q
    ||||||||||||||||||||||||| | |||||||| |||||| |  |  ||||| |||||||||||||||||||||  ||||||||||  || ||||||    
T  7220749 ccttttataggagatttgaatagagtcattgtttgaagagagt-caagtgcatcatgcttccttgagaagttttctttagatttcaaatcgttgcctctt 7220847  T
Q  173 aaagataattttgttgaatagtactttagaaatcctttatttctttggaaatgataagttgcatcaactttgtctcttacaaagatttgtctgctcttgc 272  Q
    |||||||||| |||| |||| ||||| | || | ||||  |||||||||  ||||  |||||| ||||||||||  | | | || |||||||| |  | |    
T  7220848 aaagataattatgttcaataatacttcataatttctttgcttctttggatttgatccgttgcaccaactttgtcgttcatagaggtttgtctgtttctac 7220947  T
Q  273 aacatgtcttcttttaattcatcaaggacaaaacgtattactg 315  Q
    ||  |||||||||||||||||| ||||| ||||| || |||||    
T  7220948 aatgtgtcttcttttaattcattaaggataaaacatactactg 7220990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 71 - 262
Target Start/End: Complemental strand, 29232496 - 29232305
Alignment:
Q  71 gtccttttataggagatttgaatagagccgttgtttgacgagagtgcttgcacatcaagcttccttgagaagttttcttatgatttcaaatattttcctc 170  Q
    ||||||||||||||||||| || |||| |||| ||||| |||| |    |  |||||||||||||||||||||||||||  ||||||||||||||  |||    
T  29232496 gtccttttataggagattttaaaagagtcgttatttgaagagattttgagagcatcaagcttccttgagaagttttctttagatttcaaatatttgtctc 29232397  T
Q  171 ttaaagataattttgttgaatagtactttagaaatcctttatttctttggaaatgataagttgcatcaactttgtctcttacaaagatttgt 262  Q
    |||| |||||||| |||||||||||||| | || | ||||  |||||||| ||||||  |||||||  ||||||||| | |||||| |||||    
T  29232396 ttaaggataatttcgttgaatagtacttcaaaatttcttttcttctttgggaatgatttgttgcatgcactttgtctttcacaaaggtttgt 29232305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 71 - 262
Target Start/End: Complemental strand, 29345795 - 29345604
Alignment:
Q  71 gtccttttataggagatttgaatagagccgttgtttgacgagagtgcttgcacatcaagcttccttgagaagttttcttatgatttcaaatattttcctc 170  Q
    ||||||||||||||||||| || |||| |||| ||||| |||| |    |  |||||||||||||||||||||||||||  ||||||||||||||  |||    
T  29345795 gtccttttataggagattttaaaagagtcgttatttgaagagattttgagagcatcaagcttccttgagaagttttctttagatttcaaatatttgtctc 29345696  T
Q  171 ttaaagataattttgttgaatagtactttagaaatcctttatttctttggaaatgataagttgcatcaactttgtctcttacaaagatttgt 262  Q
    |||| |||||||| |||||||||||||| | || | ||||  |||||||| ||||||  |||||||  ||||||||| | |||||| |||||    
T  29345695 ttaaggataatttcgttgaatagtacttcaaaatttcttttcttctttgggaatgatttgttgcatgcactttgtctttcacaaaggtttgt 29345604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 34566392 - 34566178
Alignment:
Q  19 ttttggcacaattgaaagcatgtagttatttatctttcttagaacactcaaggtccttttataggagatttgaatagagccgttgtttgacgagagtgct 118  Q
    ||||||||||||||||||| |||  || | ||| ||| ||  |||||||| | || |||||||||||||  ||||  || |  | ||| | |||||||      
T  34566392 ttttggcacaattgaaagcgtgttattctatatatttattcaaacactcaggatcattttataggagatcagaattaagtcaattttttaagagagtgtc 34566293  T
Q  119 tgcacatcaagcttccttgagaagttttcttatgatttcaaatattttcctcttaaagataattttgttgaatagtactttagaaatcctttatttcttt 218  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||| |||| ||||||| |||| ||||||||||   || ||||||| ||||||    
T  34566292 tgcacatcaagcttccttgagaagttttctttagatttcaaatcttttcctattaaggataattatgttaaatagtacttcgaaattcctttacttcttt 34566193  T
Q  219 ggaaatgataagttg 233  Q
    || ||||||| ||||    
T  34566192 gggaatgatatgttg 34566178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 293
Target Start/End: Complemental strand, 18062676 - 18062444
Alignment:
Q  61 aacactcaaggtccttttataggagatttgaatagagccgttgtttgacgagagtgcttgcacatcaagcttccttgagaagttttcttatgatttcaaa 160  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||| |||| ||   || || ||| |||||||||||||||| |||  || ||||||    
T  18062676 aacactcaatgtcattttataggagatttgaatagagccgttgtttgaagagaatgtgagctcaccaaacttccttgagaagttt-cttcagaattcaaa 18062578  T
Q  161 tattttcctc-ttaaagataattttgttgaatagtactttagaaatcctttatttctttggaaatgataagttgcatcaactttgtctcttacaaagatt 259  Q
    |  ||| | | ||   |||   |  |||||||||||||| | || | ||||  |||||| | ||||||| |||||||| | |||||||||||||||||||    
T  18062577 tcctttgcccattttggatttctccgttgaatagtacttcaaaatttctttgcttctttaggaatgatatgttgcatccattttgtctcttacaaagatt 18062478  T
Q  260 tgtctgctcttgcaacatgtcttcttttaattca 293  Q
    |||| ||||||||||| ||| |||||||||||||    
T  18062477 tgtccgctcttgcaacttgtattcttttaattca 18062444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 16074395 - 16074224
Alignment:
Q  19 ttttggcacaattgaaagcatgtagttatttatctttcttagaacactcaaggtccttttataggagatttgaatagagccgttgtttgacgagagtgct 118  Q
    |||||||||| |||||||  | ||||| | ||| ||||||  ||||||||||||||| |||||||||||||| |||    |||| |||||  |||||       
T  16074395 ttttggcacagttgaaagtgtatagttctctatttttcttcaaacactcaaggtcctgttataggagatttggataatatcgttctttgaaaagagtatc 16074296  T
Q  119 tgcacatcaagcttccttgagaagttttcttatgatttcaaatattttcctcttaaagataattttgttgaa 190  Q
     |||||||||| ||| |||| ||||||||||   |||| |||| ||| ||| |||| ||||||| |||||||    
T  16074295 agcacatcaagtttcgttgataagttttcttcatatttaaaatctttgcctattaaggataattatgttgaa 16074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 18062389 - 18062339
Alignment:
Q  341 gaagaggacaaaagtgggtcagatgttcatcagagcattaaccattgactt 391  Q
    ||||| ||||||||||||||||||||||||||||||| ||| |||| ||||    
T  18062389 gaagaagacaaaagtgggtcagatgttcatcagagcactaatcattaactt 18062339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 29232256 - 29232218
Alignment:
Q  273 aacatgtcttcttttaattcatcaaggacaaaacgtatt 311  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  29232256 aacatgtcttcttttaattcaccaaggacaaaacatatt 29232218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 29345555 - 29345517
Alignment:
Q  273 aacatgtcttcttttaattcatcaaggacaaaacgtatt 311  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  29345555 aacatgtcttcttttaattcaccaaggacaaaacatatt 29345517  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 463
Target Start/End: Original strand, 34497328 - 34497522
Alignment:
Q  269 ttgcaacatgtcttcttttaattcatcaaggacaaaacgtattactgtcctatgggcagtgacttttcttcagaagaggacaaaagtgggtcagatgttc 368  Q
    ||||||| | ||||||||||||| ||||  ||||| | ||| || |||||||  | || |||| |||||| | ||||  || |||||  |||||||||||    
T  34497328 ttgcaacttatcttcttttaattaatcattgacaataagtactattgtcctacagacaatgacatttctttaaaagaaaactaaagtaagtcagatgttc 34497427  T
Q  369 atcagagcattaaccattgactttagatcagagcttcatcttcacaacttgataaatacttgatcagaacatttattttcattgaccctattcat 463  Q
    || | ||  || |||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||| ||||||||| ||||| |||||    
T  34497428 attaaagtgttgaccattgactttagattagagcttcgtcttcacaacttgatgaatacttgatcaaaacattaattttcattaaccctcttcat 34497522  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 16634814 - 16635003
Alignment:
Q  13 tcatatttttggcacaattgaaagcatgtagttatttatctttcttagaacactcaaggtccttttataggagatttgaatagagccgttgtttgacgag 112  Q
    ||||| |||||||||| || ||| | | ||||| | ||| ||||||  |||||||||||||| |||||||||||||| |||| || |||||||||| |||    
T  16634814 tcatagttttggcacattttaaaacgtttagttctctatatttctttaaacactcaaggtccatttataggagatttaaatatagtcgttgtttgaagag 16634913  T
Q  113 agtgcttgcacatcaagcttccttgagaagttttcttatgatttcaaatattttcctcttaaagataattttgttgaatagtactttagaa 203  Q
    || |    ||||||||| |||||||||| |||| || || || | |||| ||| | | |||| ||||||| ||||||||||||||||||||    
T  16634914 agagacaacacatcaagattccttgagacgtttcctcat-atcttaaatctttgcttattaaggataattatgttgaatagtactttagaa 16635003  T

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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 18916520 - 18916738
Alignment:
Q  30 ttgaaagcatgtagttatttatctttcttagaacactcaa-ggtccttttataggagatttgaatagagccgttgtttgacgagagtgcttgcacatcaa 128  Q
    |||||||| ||||||| | ||| ||||||  ||||||||| ||| ||||||| |||||||||||||||| |||||||||| ||||||||   | ||||||    
T  18916520 ttgaaagcgtgtagttctctatttttcttcaaacactcaaaggttcttttattggagatttgaatagagtcgttgtttgaagagagtgccaacgcatcaa 18916619  T
Q  129 gcttccttgagaagttttcttatgatttcaaatattttcctcttaaagataattttgttgaatagtactttagaaatcctttatttctttggaaatgata 228  Q
    | |||||| ||||||||||||   |||| |||| ||| |||||| | ||||||||||||||| |  |||| | || | |||| ||||||| | ||||||     
T  18916620 gtttcctttagaagttttctttatatttgaaatctttgcctcttgaggataattttgttgaacaacacttcataatttctttgtttcttttggaatgatc 18916719  T
Q  229 agttgcatcaactttgtct 247  Q
     |||||| | |||||||||    
T  18916720 cgttgcacccactttgtct 18916738  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 315
Target Start/End: Original strand, 2905973 - 2906227
Alignment:
Q  62 acactcaaggtccttttataggagatttgaatagagccgttgtttgacgagagtgcttgcacatcaagcttccttgagaagttttcttatgatttcaaat 161  Q
    |||||||| | ||||||| ||||||||||| ||| | ||||| |||| ||||||||   | | ||||||||| |||||||||||||||   |||| ||||    
T  2905973 acactcaaagcccttttacaggagatttgattagggtcgttgcttgaagagagtgcaaccgcgtcaagcttctttgagaagttttcttcaaatttgaaat 2906072  T
Q  162 atttt-cctcttaaagataattt--tgttgaatagtactttagaaatcctttatttctttgga-aatgataagttgcatcaactttgtctcttacaaaga 257  Q
     |||| |||||||| ||||||||  ||||||| |||||||    |||  ||||||| |||  | ||||||  |||||||| | ||||||| | | | |||    
T  2906073 cttttgcctcttaaggataattttgtgttgaacagtactt---caattttttatttttttttagaatgatctgttgcatctaatttgtctttcatagaga 2906169  T
Q  258 tttgtctgctcttgcaacatgtcttcttttaattcatcaaggacaaaacgtattactg 315  Q
    |||||| | |  ||||||||||||||||||||||||| |||||||||||||| |||||    
T  2906170 tttgtccgtttatgcaacatgtcttcttttaattcattaaggacaaaacgtactactg 2906227  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 4816641 - 4816558
Alignment:
Q  62 acactcaaggtccttttataggagatttgaatagagccgttgtttgacgagagtgcttgcacatcaagcttccttgagaagttt 145  Q
    |||||||| || |||| |||||||||||||||||||| ||||||||| |||  | |   || ||||||||||||||||||||||    
T  4816641 acactcaatgttctttaataggagatttgaatagagctgttgtttgaagagttttccaacatatcaagcttccttgagaagttt 4816558  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 434
Target Start/End: Original strand, 19622485 - 19622597
Alignment:
Q  328 tgacttttcttcagaagaggacaaaagtgggtcagatgttcatcagagcattaaccattga-------ctttagatcagagcttcatcttcacaacttga 420  Q
    |||| |||||| ||||||| |||||| | |||||||||||||||| ||| |||||||||||       ||| ||||||||||||| |||| | |||||||    
T  19622485 tgacatttctttagaagag-acaaaacttggtcagatgttcatcaaagcgttaaccattgatttgattcttcagatcagagcttcgtctttaaaacttga 19622583  T
Q  421 taaatacttgatca 434  Q
    | ||||||||||||    
T  19622584 tgaatacttgatca 19622597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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