View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_high_33 (Length: 448)

Name: NF19878_high_33
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19878_high_33
NF19878_high_33
[»] chr8 (3 HSPs)
chr8 (137-206)||(39322860-39322929)
chr8 (349-433)||(39323068-39323166)
chr8 (272-316)||(39322994-39323038)


Alignment Details
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 39322860 - 39322929
Alignment:
Q  137 gagaacaatatcacaagtaagtatgtgagatttgtcgatctatttatactaaatagaaaaacaatcaatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39322860 gagaacaatatcacaagtaagtatgtgagatttgtcgatctatttatactaaatagaaaaacaatcaatt 39322929  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 433
Target Start/End: Original strand, 39323068 - 39323166
Alignment:
Q  349 tccattaaatcccagtgggctttgttggtaacaac--------------cgtttttggtagcatatgagtctgactcgttgaatttagttcccatatcg 433  Q
    |||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39323068 tccattaaatcccagtgggctttgttggtaacaacaacaaacaaggttccgtttttggtagcatatgagtctgactcattgaatttagttcccatatcg 39323166  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 39322994 - 39323038
Alignment:
Q  272 gagtatatttaatcaaagtcttcgaaaattagaggttaacacatc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39322994 gagtatatttaatcaaagtcttcgaaaattagaggttaacacatc 39323038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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