View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_high_34 (Length: 444)
Name: NF19878_high_34
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 37186836 - 37186402
Alignment:
| Q |
1 |
cgctttgtaattggtcatgggtaagccatctcatctctatagtttcgacgatttaagttcctataattatctcgaagtttgtttttagccccttgaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37186836 |
cgctttgtaattggtcatgggtaagccatctcatctctatagtttcgacgatttaagttcctataattatctcgaagtttgtttttagccccttgaccta |
37186737 |
T |
|
| Q |
101 |
aaatgtgagttcaagatacttataaannnnnnnnnnnacttctttctctagtgccacgacaggtggtatcctagatagagccattgaagcagaagatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37186736 |
aaatgtgagttcaagatacttataaatttatttttttactcctttctctagtgccacgacaggtggtatcctagatagagccattgaagcagaagatagt |
37186637 |
T |
|
| Q |
201 |
aaacatggagatttcctgaggctggtaatgatcacttcaataacatttgaaaatatagtatgatcacattgatttgaaggaggaaagaaaaagcaataag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37186636 |
aaacatggagatttcctgaggctggtaatgatcacttcaataacatttgaaaatatagtatgatcacattgatttgaaggaggaaagaaaaagcaataag |
37186537 |
T |
|
| Q |
301 |
ttttcaaatttgtgttttgattgtgcaggatcatgttgaaggataccttgaattatcagcaaagacaaagacttattttgccactgctgttaacttgtgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37186536 |
ttttcaaatttgtgttttgattgtgcaggatcatgttgaaggataccttgaattatcagcaaagacaaagacctattttgccactgctgttaacttgtgg |
37186437 |
T |
|
| Q |
401 |
gatgctgacttctatatcaaagttgatgatgatgt |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
37186436 |
gatgctgacttctatatcaaagttgatgatgatgt |
37186402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 330 - 435
Target Start/End: Original strand, 17124686 - 17124791
Alignment:
| Q |
330 |
atcatgttgaaggataccttgaattatcagcaaagacaaagacttattttgccactgctgttaacttgtgggatgctgacttctatatcaaagttgatga |
429 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| | ||| ||||||||||| || ||| ||||||||||||| |
|
|
| T |
17124686 |
atcatgttgaaggataccttgaattgtcagcaaagacaaagacatactttgccactgctgtgagcttatgggatgctgatttttatgtcaaagttgatga |
17124785 |
T |
|
| Q |
430 |
tgatgt |
435 |
Q |
| |
|
||||| |
|
|
| T |
17124786 |
cgatgt |
17124791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 17124439 - 17124521
Alignment:
| Q |
147 |
tctagtgccacgacaggtggtatcctagatagagccattgaagcagaagatagtaaacatggagatttcctgaggctggtaat |
229 |
Q |
| |
|
|||||||| || |||| ||||||||||| ||||| ||||||||||| ||||| || ||||||||||| ||||||||||||| |
|
|
| T |
17124439 |
tctagtgctacatcaggaggtatcctagacagagctattgaagcagaggatagaaagcatggagattttttgaggctggtaat |
17124521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University