View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_high_35 (Length: 441)
Name: NF19878_high_35
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_35 |
 | |
|
| [»] scaffold2156 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 37)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 17728205 - 17727798
Alignment:
| Q |
19 |
tcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17728205 |
tcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaacatcacacgttcatcgaac |
17728106 |
T |
|
| Q |
119 |
cttttgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctca |
218 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17728105 |
cttttgtacactgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggctttctccactttcttccttacaatatctcaacctca |
17728006 |
T |
|
| Q |
219 |
atggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaactt |
318 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17728005 |
atggaattgatcttcataaggaaacaaattggcttcaagtattgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaactt |
17727906 |
T |
|
| Q |
319 |
cctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggtttttt |
418 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
17727905 |
cctgatcaatccatctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcactt-cctggtggatttttt |
17727807 |
T |
|
| Q |
419 |
aatctcacc |
427 |
Q |
| |
|
||||||||| |
|
|
| T |
17727806 |
aatctcacc |
17727798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 19029434 - 19029027
Alignment:
| Q |
19 |
tcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19029434 |
tcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaacatcacacgttcatcgaac |
19029335 |
T |
|
| Q |
119 |
cttttgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctca |
218 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19029334 |
cttttgtacactgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggctttctccactttcttccttacaatatctcaacctca |
19029235 |
T |
|
| Q |
219 |
atggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaactt |
318 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19029234 |
atggaattgatcttcataaggaaacaaattggcttcaagtattgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaactt |
19029135 |
T |
|
| Q |
319 |
cctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggtttttt |
418 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
19029134 |
cctgatcaatccatctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcactt-cctggtggatttttt |
19029036 |
T |
|
| Q |
419 |
aatctcacc |
427 |
Q |
| |
|
||||||||| |
|
|
| T |
19029035 |
aatctcacc |
19029027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 23 - 426
Target Start/End: Original strand, 18143727 - 18144124
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||| ||| || || ||| |
|
|
| T |
18143727 |
gaacttgagtttcttagttacttggatttgagattcaatgattttgatatgataagaattccatccattcaacacaacatcacacattcctctaaacttg |
18143826 |
T |
|
| Q |
123 |
tgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatgg |
222 |
Q |
| |
|
| | | |||||||||||| | | | || ||| ||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
18143827 |
tctaccttgacttatcct-acagctttgtta----ctggt-atggataatcttgattggctttctccactttcttccttaaaatatctcaacctcagtgg |
18143920 |
T |
|
| Q |
223 |
aattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||| || |
|
|
| T |
18143921 |
aattgatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcactattagaattacagttgagttcttgtaacctgaacaacttaatg |
18144020 |
T |
|
| Q |
323 |
atcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatc |
422 |
Q |
| |
|
||||| |||| ||| | |||||||||||||| ||||||||||||||| ||||||| ||| | ||||||||||| ||||||||| |||||||||||| |
|
|
| T |
18144021 |
atcaacccatatatcaagtatttgaatttgtcgtcaattgtaactcttgatctttctttaaacaacttcacctctcatttacctgataggttttttaatc |
18144120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 18102917 - 18103316
Alignment:
| Q |
19 |
tcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaac |
118 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
18102917 |
tcttggacttgagtttctcaattacttggatttgagctggaatcattttgatgtgataagaattccatccattcaacacaacatcacacattcatctaaa |
18103016 |
T |
|
| Q |
119 |
cttttgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctca |
218 |
Q |
| |
|
||| | | | |||||||||||| || | ||| | ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| | |
|
|
| T |
18103017 |
cttgtctaccttgacttatcctacaacta---tcctattctgcacatggatagtcttcactggctttctccactttcttccttaaaatatctcaacctta |
18103113 |
T |
|
| Q |
219 |
atggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaactt |
318 |
Q |
| |
|
| | ||||||||||||||||||||||| ||| |||||||||| | ||||||||||||| |||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
18103114 |
gttggattgatcttcataaggaaaccaactggtttcaagtagtaagtacacttccttcattgttagaattacagttgagttattgtaacctgaacaactt |
18103213 |
T |
|
| Q |
319 |
cctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggtttttt |
418 |
Q |
| |
|
| ||||| |||| ||||||||||||| |||||||||||| ||| |||||||| | ||| ||||||| | ||| |||| ||||||||||||| |
|
|
| T |
18103214 |
c---------ccatcagttgagtatttgaatttgtattcaattgtaacccttgatctttcagaaaacaatttcacttttcatttacatgatgggtttttt |
18103304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 23 - 427
Target Start/End: Original strand, 19375173 - 19375577
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||||||| | ||||||||||| ||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
19375173 |
gaacttgagtttctcagttacttggatttgagtttcaatgaatttgacgtgataagaattccgtccattcaacacaacttcacacattcatctaaccttt |
19375272 |
T |
|
| Q |
123 |
tgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacc------- |
215 |
Q |
| |
|
||| | ||||||||||||| || | |||| |||||||||||||||| |||||| ||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
19375273 |
tgttccttgacttatccttcaactacagtcctactctgcacatggataatcttcaatggctttcttcactttcttccttgaaatatctcaacctcggtgg |
19375372 |
T |
|
| Q |
216 |
--tcaatggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaac |
313 |
Q |
| |
|
|| |||| ||||||||||||||| |||||||||| || ||||||||| | ||||||||||||| |||||||||||||||||| |||| ||||| ||| |
|
|
| T |
19375373 |
agtctttggagttgatcttcataaggtaaccaattggtttgaagtagtgacttcacttccttcactattagaattacagttgagtcggtgtaacctgaac |
19375472 |
T |
|
| Q |
314 |
aacttcctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggt |
413 |
Q |
| |
|
||||| ||||||| |||| | ||||||||||||||||||||||| |||| ||||||| ||| ||||||||| ||| ||||||||||||| |
|
|
| T |
19375473 |
aactt---------tccatctgttgagtttttgaatttgtcttcaattgtaagtcttgatctttcttcaaacaatttcacctttcatttacctgatgggt |
19375563 |
T |
|
| Q |
414 |
tttttaatctcacc |
427 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19375564 |
tttttaatctcacc |
19375577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 19380380 - 19380775
Alignment:
| Q |
19 |
tcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaac |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||| |||| |||||| | | |
|
|
| T |
19380380 |
tcttgaacttaagtttcttagttacttggatttgagtgaaaataattttgatgtgataagaattccatccattcaacaaaacattacacattcatctatc |
19380479 |
T |
|
| Q |
119 |
cttttgtgcattgacttatcc---ttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacc |
215 |
Q |
| |
|
|||||| | ||||||||||| ||| || ||||| |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
19380480 |
cttttgcaccttgacttatcccacttatat---ggtcc---tctgcacatggataatcttgattggctttctccactttcttccttaaaatatctcaacc |
19380573 |
T |
|
| Q |
216 |
tcaatggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaa |
315 |
Q |
| |
|
|| |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||| |
|
|
| T |
19380574 |
tcgatggaatttatcttcataaggaaaataattggtttcaagtagtgaatacacttccttcactattagaattacagttgagtcattgtaacctgaacaa |
19380673 |
T |
|
| Q |
316 |
cttcctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttt |
415 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||||| |||||||||| ||||||| ||| | ||||||||||||||||| |||||||| |
|
|
| T |
19380674 |
cttc---------ccatctgttgagtatttgaatttgtcttcacttgtaactctccatctttctggaaacaacttcacctctcacttaccagatgggttg |
19380764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 23 - 426
Target Start/End: Complemental strand, 14896911 - 14896508
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| | ||| | ||||||| ||||| |||||| || ||||||||||||||||| |||||| | ||||| |
|
|
| T |
14896911 |
gaactggagtttctcagttacttagatttgagtatgaatcattttgatgtgataagtattccagtcactcaacacaacatcacacattcatctagccttt |
14896812 |
T |
|
| Q |
123 |
tgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatgg |
222 |
Q |
| |
|
| | | ||||||||||||| || ||||||| | |||||||||||||| |||| ||||| ||||||||| ||||||||| ||||||||| ||| | ||| |
|
|
| T |
14896811 |
tctaccttgacttatccttcaacgaaggtcctaatctgcacatggataatcttgattggctttctccacattcttccttgaaatatctcatccttagtgg |
14896712 |
T |
|
| Q |
223 |
aattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctg |
322 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||| |||||| |||| |||| || ||||| || ||||||||| || |
|
|
| T |
14896711 |
aattgatcttcacaaggaatccaattggcttcaagtagtgagtacacttccctcactattagaactacaattgactgattgcaaactgaacaacttcatg |
14896612 |
T |
|
| Q |
323 |
atcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatc |
422 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||||||||| |||| ||||||| ||| | ||||||||||| || || ||||||||||||||| |
|
|
| T |
14896611 |
ttcaactcatcttttgagtatttgaatttgtcttcaattgtaattcttaatctttctttaaacaacttcacctctcatttgccaaatgggttttttaatc |
14896512 |
T |
|
| Q |
423 |
tcac |
426 |
Q |
| |
|
|||| |
|
|
| T |
14896511 |
tcac |
14896508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 23 - 427
Target Start/End: Original strand, 19399199 - 19399591
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||||| ||||||| |||||| || ||| |
|
|
| T |
19399199 |
gaacttgagtttctcagttacttggatttgagtgagaatgaatttcatgtgataagaattccatccattcaacacaatatcacacattcatctaaacttg |
19399298 |
T |
|
| Q |
123 |
tgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatgg |
222 |
Q |
| |
|
| | ||||||| |||| || | || |||||||| ||||||| |||| ||||| |||||||||||||||||||| ||||||||||||| ||| | |
|
|
| T |
19399299 |
tagactttgacttctcctggaacta---tcagactctgcaaatggataatcttgattggctttctccactttcttccttaaaatatctcaaccttaattg |
19399395 |
T |
|
| Q |
223 |
aattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctg |
322 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| | ||||||||| ||| |||| |||||||||||||||| || ||||| |||||||| |
|
|
| T |
19399396 |
gattgatcttcataaggaaaccaactggtttcaagtagtaagtacacttccgtcattgtttgaattacagttgagtgcatgtaacctgaacaactt---- |
19399491 |
T |
|
| Q |
323 |
atcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatc |
422 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||||||||||| |||||||||||||| | ||||||| ||| |||||||||||||||||||| |
|
|
| T |
19399492 |
-----tccatctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatt |
19399586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 18022283 - 18022685
Alignment:
| Q |
19 |
tcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaac |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||| || |
|
|
| T |
18022283 |
tcttgaacttgagtttcttagttatttggatttgagtcataatgaatttgatgtgataagaattccatctattcaacacaacatcacacactcatctaaa |
18022382 |
T |
|
| Q |
119 |
cttttgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctca |
218 |
Q |
| |
|
|||| | | ||||||||||||| ||| | |||| | ||||| |||| |||| | ||| ||||| ||||||||||||| |||||||| |||||| |
|
|
| T |
18022383 |
tttttctaccttgacttatcctttaatgatggtc------ttcacatagataatcttgactggctttcttcactttcttccttgaaatatctcgacctca |
18022476 |
T |
|
| Q |
219 |
atggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaactt |
318 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||| | ||| ||||||||||||| ||| ||||||||||||| | || || | || | ||| |
|
|
| T |
18022477 |
gtggacttgatcttcataaggaaaccaactggtttcaagtaatcaattcacttccttcactattacaattacagttgagcgattgtaaattgaatagctt |
18022576 |
T |
|
| Q |
319 |
cctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggtttttt |
418 |
Q |
| |
|
| ||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||| | ||||||||||| ||||| ||||||||||| |
|
|
| T |
18022577 |
catgatcaacccatctattgagtatttgaatttgtcttcacttgtaactcttgatctttctttcaacaacttcacctctcatttaccaaatgggtttttt |
18022676 |
T |
|
| Q |
419 |
aatctcacc |
427 |
Q |
| |
|
||||||||| |
|
|
| T |
18022677 |
aatctcacc |
18022685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 18146305 - 18146709
Alignment:
| Q |
19 |
tcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaac |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| | |||||| |||||||||||||||||||||||||| ||||||| | ||| ||| |
|
|
| T |
18146305 |
tcttgaacttgagtttcttaattacttggatttgagtgataattattttgatatgataagaattccatccattcaacacaatatcacacatatatctaac |
18146404 |
T |
|
| Q |
119 |
cttttgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctca |
218 |
Q |
| |
|
||||||| | ||||||||||||| || | ||||| |||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||| ||| | |
|
|
| T |
18146405 |
cttttgtaccttgacttatcctttaactacggtcctactctgcacatgcataatcttcattggctttctccactttcttccttgaaatatctctccctta |
18146504 |
T |
|
| Q |
219 |
atggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaactt |
318 |
Q |
| |
|
|| ||||||||||| ||||||||||| ||| |||||||||| ||| ||||||||||||| ||| ||||| ||||| | || ||||| |||||||| |
|
|
| T |
18146505 |
gtgagattgatcttcacaaggaaaccaactggtttcaagtagtaaattcacttccttcactattaaaattaaagttgtttaattgtaacctgaacaactt |
18146604 |
T |
|
| Q |
319 |
cctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggtttttt |
418 |
Q |
| |
|
| | || || ||||||||| |||||||||||||||||| || |||||||| |||||||| || |||| |||||||| ||||||||||||| |||| |
|
|
| T |
18146605 |
cataattaacacatctattgggtatttgaatttgtcttcacttataactcttgatctttcaggaaataatttaacctctcatttacctgatgggtatttt |
18146704 |
T |
|
| Q |
419 |
aatct |
423 |
Q |
| |
|
||||| |
|
|
| T |
18146705 |
aatct |
18146709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 23 - 427
Target Start/End: Original strand, 19461011 - 19461415
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | ||| ||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
19461011 |
gaacttgagtttctcagttacttggatttgagtctgaatgaatttgatgtgataagatttccatccattcaacacaacatcacacattcatctaaccttt |
19461110 |
T |
|
| Q |
123 |
tgtgcattgacttatcc--------ttaa----atcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatct |
210 |
Q |
| |
|
| | | ||||||||||| ||| |||| ||||| ||| |||||||||| |||| |||| ||||||||| ||||||||| ||||||| |
|
|
| T |
19461111 |
tctaccttgacttatcccccttccgttatcatgatcacggtcc---tcttcacatggataatcttggttggctttctccacattcttccttgaaatatct |
19461207 |
T |
|
| Q |
211 |
caacctcaatggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaaccta |
310 |
Q |
| |
|
| |||| | ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
19461208 |
cgaccttagtggaattcatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcactattagaattacagttgagtcattgtaacctg |
19461307 |
T |
|
| Q |
311 |
aacaacttcctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatg |
410 |
Q |
| |
|
||||| ||| |||||| |||| |||||||||||||||| | ||||||||||| ||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
19461308 |
aacaatttc---------ccatctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaatttcacctctcatttacctgatg |
19461398 |
T |
|
| Q |
411 |
ggttttttaatctcacc |
427 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
19461399 |
ggttttttaatctcacc |
19461415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 23 - 427
Target Start/End: Original strand, 18015585 - 18015977
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||||||| |||||||||||| ||| || ||||||| |
|
|
| T |
18015585 |
gaacttgaatttcttagttacttggatttgagtttcaatgaatttgatgtgataagtattccatccattcaaaacaacatcacacattcctctaaccttt |
18015684 |
T |
|
| Q |
123 |
tgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatgg |
222 |
Q |
| |
|
| | | |||||||| | | | ||||| |||||||||| ||| ||||| |||| |||| ||| || || ||||||||||||| | | | |
|
|
| T |
18015685 |
tctaccttgacttacacccc---cccacttttactcttcacatggataatctggattggctttcaccacattcgtcgttgaaatatctcaaccttagttg |
18015781 |
T |
|
| Q |
223 |
aattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctg |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
18015782 |
gattgatcttcataaggaaaccaattggcttcaaatagtgaattcacttccttcactattagaattagagttgagtgggtgcaacctgaacaacttc--- |
18015878 |
T |
|
| Q |
323 |
atcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatc |
422 |
Q |
| |
|
|||||| |||| |||||||||||| ||||| |||||||||||| |||||| |||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
18015879 |
------ccatctgttgagtatttgaatttgccttcacttgtaactctttctctttctttcaacaacttcacctctcatatacctgatgggttttttaatc |
18015972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 23 - 423
Target Start/End: Original strand, 18115444 - 18115844
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| | ||||||| |||||| |||||||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
18115444 |
gaacttgagtttctcagttacttggatttgagctcaaatgattttgatgtgataagatttccatccattcaacacaacctcacacattcatctaaccttt |
18115543 |
T |
|
| Q |
123 |
tgtgcattgacttatcc--------ttaa----atcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatct |
210 |
Q |
| |
|
| | ||||||||||| ||| |||| ||||| ||| |||||||||| |||| |||| ||||||||| ||||||||| ||||||| |
|
|
| T |
18115544 |
tccaccttgacttatcccccttccgttatcatgatcacggtcc---tcttcacatggataatcttggttggctttctccacattcttccttgaaatatct |
18115640 |
T |
|
| Q |
211 |
caacctcaatggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaaccta |
310 |
Q |
| |
|
| |||| | ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
18115641 |
cgaccttagtggaattcatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcactattagaattacagttgagtcattgtaacctg |
18115740 |
T |
|
| Q |
311 |
aacaacttcctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatg |
410 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||||||| | ||||||||||| ||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
18115741 |
aacaacttc---------ccatctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaacttcacctctcatttacctgatg |
18115831 |
T |
|
| Q |
411 |
ggttttttaatct |
423 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18115832 |
ggttttttaatct |
18115844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 164 - 427
Target Start/End: Original strand, 18164776 - 18165039
Alignment:
| Q |
164 |
atggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtagtga |
263 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
18164776 |
atggataatcttgattggctttctccactttcttccttgaaatatctcaaccttagttttattgatcttcataaggaaaccaattggattcaagcagtga |
18164875 |
T |
|
| Q |
264 |
atacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtcttcaattgt |
363 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||| ||||||||| | || ||||| || | ||| ||||||||||||||||||| |
|
|
| T |
18164876 |
gtacacttccttcactattagaattacagttgagtaattgcaacctgaacaacttcataattggaacatcttttaagtatgtgaatttgtcttcaattgt |
18164975 |
T |
|
| Q |
364 |
aactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctcacc |
427 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
18164976 |
aactcttgatctttcttacaactatttcacctctcacttacttgatggattttttaatctcacc |
18165039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 245 - 427
Target Start/End: Original strand, 19436731 - 19436913
Alignment:
| Q |
245 |
aattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatt |
344 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||| |||| |||||||||||| | |||| |
|
|
| T |
19436731 |
aattggcttcaaatagtgaattcacttccttcactattagaattaaagttgagtgggtgcagcctgaacaacttcgtgattaatccatctattcagtatt |
19436830 |
T |
|
| Q |
345 |
tgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctcacc |
427 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19436831 |
taaatttgtcttcacttgtaactctttatctttcagataacgatttcacctctcacttaccggatgggttttttaatctcacc |
19436913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 17941219 - 17941621
Alignment:
| Q |
19 |
tcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaac |
118 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| || || |
|
|
| T |
17941219 |
tcttgaacttgagtttctcagttatttggatttgagtgataataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaa |
17941318 |
T |
|
| Q |
119 |
cttttgtgcattgacttatcct---taaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacc |
215 |
Q |
| |
|
||| | | || ||||||||| | ||| | | ||||| |||||||||| |||||||||| |||||||| ||||| |||| |||||||| || |
|
|
| T |
17941319 |
cttgtccaccttaacttatcctccttcaattttgataatactcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgcc |
17941418 |
T |
|
| Q |
216 |
tcaatggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaa |
315 |
Q |
| |
|
| | ||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||| || | | || ||||| ||||| |
|
|
| T |
17941419 |
ttagtggcattgatcttcatgaggaaactaattggcttcaagcagtgaatacacttccttcactattagagttacgattaaaaagttgtaacctgaacaa |
17941518 |
T |
|
| Q |
316 |
cttcctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttt |
415 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||||| |||||||||||| |||||| | ||| ||||||||||| | |||||||||||||| |
|
|
| T |
17941519 |
cttc---------ccatctgttgaatatttgaatttgtcttcacttgtaactctttctctttctagaaacaatttcacctcttatatacctgatgggttt |
17941609 |
T |
|
| Q |
416 |
tttaatctcacc |
427 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17941610 |
tttaatctcacc |
17941621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 164 - 422
Target Start/End: Original strand, 19392769 - 19393027
Alignment:
| Q |
164 |
atggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtagtga |
263 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| || |||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19392769 |
atggatagtcttgattggctttctccactttcttcattgaaatatctcttcctaagtggaattgatcttcataaggaaaccaattggcttcaagcagtga |
19392868 |
T |
|
| Q |
264 |
atacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtcttcaattgt |
363 |
Q |
| |
|
|| |||| ||||||||||||||||||| || |||| || ||||| | |||||| |||||| |||||| |||| |||||||||||||||||| |||| |
|
|
| T |
19392869 |
gtatactttcttcactgttagaattacaattaagtgaatgtaacctcgaaaacttcaagatcaagccatcttttgagtatttgaatttgtcttcacttgt |
19392968 |
T |
|
| Q |
364 |
aactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatc |
422 |
Q |
| |
|
||||||| ||||||| ||||| | |||||||| | ||||| ||||||||||||||| |
|
|
| T |
19392969 |
aactcttgatctttcttacaacaacttcacctccaatatacctaatgggttttttaatc |
19393027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 172 - 427
Target Start/End: Original strand, 19413821 - 19414067
Alignment:
| Q |
172 |
tcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacactt |
271 |
Q |
| |
|
|||||||||| ||| |||||||||||| || ||||||||| ||| | | | |||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
19413821 |
tcttcattggctttatccactttcttcgttgaaatatctcacccttagttggattgatcttcataaggaaaccaattggcctcaaatagtgaatacactt |
19413920 |
T |
|
| Q |
272 |
ccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtcttcaattgtaactcttt |
371 |
Q |
| |
|
|||||||| |||||||||||| ||||| || |||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
19413921 |
ccttcactattagaattacagatgagtcattgtaacctaaataacttc---------ccatctgttgagcatttgaatttgtcttcaattgtaactcttg |
19414011 |
T |
|
| Q |
372 |
atctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctcacc |
427 |
Q |
| |
|
||||||| ||||| | ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19414012 |
atctttcttacaacaacttcacctctcatatacctgatgggttttttaatctcacc |
19414067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 154 - 423
Target Start/End: Original strand, 19333628 - 19333888
Alignment:
| Q |
154 |
aactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggctt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| | | |||||||||| |||||||||||||| | || |
|
|
| T |
19333628 |
aactctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgttt |
19333727 |
T |
|
| Q |
254 |
caagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgt |
353 |
Q |
| |
|
||| |||||||| ||||||||||||| ||||||||||||||||||| || || | ||||||||| |||| | ||| ||||||||||||| |
|
|
| T |
19333728 |
caaatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttc---------ccatttgatgagtatttgaatttgt |
19333818 |
T |
|
| Q |
354 |
cttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatct |
423 |
Q |
| |
|
||||||||||||||||| ||||||| | ||| | || |||||||| |||| |||||||||||||||||| |
|
|
| T |
19333819 |
cttcaattgtaactcttgatctttctagaaacaactttacctctcatttacttgatgggttttttaatct |
19333888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 172 - 377
Target Start/End: Original strand, 19351031 - 19351227
Alignment:
| Q |
172 |
tcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacactt |
271 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
19351031 |
tcttgattggctttctccactttcttccataaaatatctcaacctcggtggaattgatcttcataaggaaaccaattggcttcaaatagtgaattcactt |
19351130 |
T |
|
| Q |
272 |
ccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtcttcaattgtaactcttt |
371 |
Q |
| |
|
|||||||||||| ||||||||||| ||| || ||||| ||||||||| |||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
19351131 |
ccttcactgttaaaattacagttgggtgaatgtaacctgaacaacttc---------ccatctgttgagtatttgaatttgtcttcacttgtaactcttg |
19351221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 19436360 - 19436628
Alignment:
| Q |
24 |
aacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaacctttt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| | ||||||| ||||||||| |||||||||||||||| ||||||| |||||| || ||| | |
|
|
| T |
19436360 |
aacttgagtttcttagttacttggatttgagtgtgaatgattttgatgtgataagaatttcatccattcaacacaatatcacacattcatctaaacttct |
19436459 |
T |
|
| Q |
124 |
gtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatgga |
223 |
Q |
| |
|
| | |||||||||| | || | ||| | |||||||||| ||| |||| ||||| ||||| | |||||||||||| ||||||||||||| | || | |
|
|
| T |
19436460 |
ctaccttgacttatcgtacaacta---tcctattctgcacatgaataatcttgattggctttcttccctttcttccttaaaatatctcaaccttactgaa |
19436556 |
T |
|
| Q |
224 |
attgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttg |
295 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| ||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
19436557 |
attgatcttcataaggaaaccaactggtttcaagcagtgaattcactttcttcactattagaattacagttg |
19436628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 155 - 427
Target Start/End: Complemental strand, 24493807 - 24493535
Alignment:
| Q |
155 |
actctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttc |
254 |
Q |
| |
|
||||| |||||||||| |||||||||| || ||||||||||||| || ||||||||||||| | |||||| ||||||| | |||||||||||||||||| |
|
|
| T |
24493807 |
actcttcacatggataatcttcattggcttcctccactttcttcgttgaaatatctcaaccttagtggaatcgatcttcgtgaggaaaccaattggcttc |
24493708 |
T |
|
| Q |
255 |
aagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtc |
354 |
Q |
| |
|
||| |||| ||||||||||||||| |||||||||| ||| || || ||||||||||||||| ||||||| ||| | |||| |||| ||||||||| |
|
|
| T |
24493707 |
aagaagtggctacacttccttcactattagaattacgtatgattgattgtaacctaaacaacttcatgatcaactcattttttgagtattcgaatttgtc |
24493608 |
T |
|
| Q |
355 |
ttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctcacc |
427 |
Q |
| |
|
|||| ||||||||||| ||||||| | ||| | |||| |||||| ||||| ||| |||||||| |||||| |
|
|
| T |
24493607 |
ttcacttgtaactcttgatctttctgaaaacaacttcagctctcagttaccaaatgcattttttaacctcacc |
24493535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 161 - 427
Target Start/End: Original strand, 19424233 - 19424499
Alignment:
| Q |
161 |
cacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtag |
260 |
Q |
| |
|
|||||||||| |||| ||||| ||||| |||||||||| || | |||| |||| | ||||||||||||| ||| |||| ||||||| |||||| || |
|
|
| T |
19424233 |
cacatggataatcttgattggctttcttcactttcttcgttggagaatctttaccttagtggaattgatctttctaaagaaagcaattggattcaaggag |
19424332 |
T |
|
| Q |
261 |
tgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtcttcaat |
360 |
Q |
| |
|
| | ||||||||||||||| ||| ||||||| | |||| || || | |||||||||| ||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
19424333 |
tcagtacacttccttcactattacaattacaaataagtgattggaaaccaaacaacttcatgatcaacccatcaattgagtatttgaatttgtcttcaat |
19424432 |
T |
|
| Q |
361 |
tgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctcacc |
427 |
Q |
| |
|
|||||| ||| ||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19424433 |
tgtaacacttgatctttctttcaacaatttcgcctctcatttacctgatgggttttttaatctcacc |
19424499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 155 - 424
Target Start/End: Original strand, 25462661 - 25462930
Alignment:
| Q |
155 |
actctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttc |
254 |
Q |
| |
|
||||| |||||||||| |||||||||| |||||||| | ||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
25462661 |
actcttcacatggataatcttcattggctttctccattatcttccttaaaatatctcaacctcaatgcaattgatcttcataaggaaactaattggcttc |
25462760 |
T |
|
| Q |
255 |
aagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtc |
354 |
Q |
| |
|
||| |||| ||| ||| ||||||| || || || || ||| | || | | ||||||||| ||| ||| ||||||||| |||||||||||||| |
|
|
| T |
25462761 |
aagcagtgtctactctttcttcactattcgagttgcacttgcaagcttgtgatttgaacaacttcatgaccaaatcatctattgggtatttgaatttgtc |
25462860 |
T |
|
| Q |
355 |
ttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctc |
424 |
Q |
| |
|
||| || |||||||| ||||||| ||||| | ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
25462861 |
ttcgcttttaactcttgatctttcttacaacaacttcacctctcatttacctgatggtttttttaatctc |
25462930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 19419472 - 19419684
Alignment:
| Q |
21 |
ttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaacct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
19419472 |
ttgaacttgagtttcttagttacttggatttgagtcataataaatttaatgtgataagaattccatccattcaacacaacatcacacattcatctaacct |
19419571 |
T |
|
| Q |
121 |
tttgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaat |
220 |
Q |
| |
|
| || |||||||||||| |||| | ||| |||||| ||| |||| ||||| |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
19419572 |
tgtgaaacttgacttatcct----tcaactt-----tcttcacatgtataatcttgattggctttctccactttcttccttaaaatatctcaacctcggt |
19419662 |
T |
|
| Q |
221 |
ggaattgatcttcataaggaaa |
242 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19419663 |
ggaattgatcttcataaggaaa |
19419684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 90 - 295
Target Start/End: Original strand, 17949373 - 17949579
Alignment:
| Q |
90 |
ttcaacacaacatcacacgttcatcgaaccttttgtgcattgacttatcc---ttaaatcaaggtccaactctgcacatggatagtcttcattggttttc |
186 |
Q |
| |
|
||||||| ||||| |||| |||||| ||||||||| | ||||||||||| ||| || ||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
17949373 |
ttcaacaaaacattacacattcatctaaccttttgcaccttgacttatcccacttatat---ggtcctactctgcacatggataatcttcattggctttc |
17949469 |
T |
|
| Q |
187 |
tccactttcttccttacaatatctcaacctcaatggaattgatcttc-ataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttaga |
285 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||||||| ||||||||| |||||| |||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
17949470 |
tccactttcttccttaaattatctcaacctcggtggaattgatcttcaataaggaaaataattggtttcaagtagtgaattcactttcttcactattaga |
17949569 |
T |
|
| Q |
286 |
attacagttg |
295 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17949570 |
attaaagttg |
17949579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 164 - 427
Target Start/End: Original strand, 16676839 - 16677102
Alignment:
| Q |
164 |
atggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtagtga |
263 |
Q |
| |
|
||||||| |||||||||| ||| | |||||||||||| | |||||| |||| | |||| |||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
16676839 |
atggataatcttcattggctttttatactttcttccttgaagtatctcgaccttagtggacttgatcttcataaggaaaccaattggattcagaaagtga |
16676938 |
T |
|
| Q |
264 |
atacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtcttcaattgt |
363 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||| || || | ||||||||| || |||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
16676939 |
atacacttccttcactattagaattgcggttgagttcttgtaaattgaacaacttcatgctcaactcatctattgggtatttgaattcctcttcaattgt |
16677038 |
T |
|
| Q |
364 |
aactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctcacc |
427 |
Q |
| |
|
||||||| ||||||| ||||| |||| |||| ||| |||| | |||||||| ||||||||| |
|
|
| T |
16677039 |
aactcttgatctttcttacaacaatttaacctttcagttactaaacgggtttttaaatctcacc |
16677102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 427
Target Start/End: Original strand, 18108067 - 18108322
Alignment:
| Q |
172 |
tcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacactt |
271 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||| ||||||||| ||| |||| |||||||||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
18108067 |
tcttcattggctttcttcacattcttccttgaaatatctcagccttggtggagttgatcttcataaggaaaccaactggtttcaagtagtgaattcactt |
18108166 |
T |
|
| Q |
272 |
ccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtcttcaattgtaactcttt |
371 |
Q |
| |
|
||||||| ||||||||||||||| || | ||||| || |||||| |||| ||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
18108167 |
tcttcactattagaattacagttgtttgactataaccttaataacttcttgattggaacatctatcagatatttgaatttgtcttcacttgtaactctta |
18108266 |
T |
|
| Q |
372 |
atctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctcacc |
427 |
Q |
| |
|
||||| | ||| | |||||||| || ||||| |||||||||| ||||||||| |
|
|
| T |
18108267 |
atcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcacc |
18108322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 330 - 427
Target Start/End: Original strand, 17941740 - 17941837
Alignment:
| Q |
330 |
catctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctcacc |
427 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17941740 |
catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaatttcacctctcatatacctgatgggttttttaatctcacc |
17941837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 18107927 - 18108030
Alignment:
| Q |
19 |
tcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaac |
118 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||||| ||| | ||||||| ||||||||||||||||||||||||||| ||||||| |||||| ||| |
|
|
| T |
18107927 |
tcttgaccttgagtttctcagttatttagatttgagctggaatgattttgatgtcataagaattccatccattcaacacaatatcacacattcatctaac |
18108026 |
T |
|
| Q |
119 |
cttt |
122 |
Q |
| |
|
|||| |
|
|
| T |
18108027 |
cttt |
18108030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 16676692 - 16676809
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||| |||||| | |||| |||||| |
|
|
| T |
16676692 |
gaacttgagtttctaatttacttggatttgagctggaatgaatttgacctaataagaattccatccattcaacaaaacctcacacatgcatctaaccttg |
16676791 |
T |
|
| Q |
123 |
tgtgcattgacttatcct |
140 |
Q |
| |
|
| | | |||||||||||| |
|
|
| T |
16676792 |
tctaccttgacttatcct |
16676809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 19333476 - 19333592
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | ||| |||||| | |||| |||||||||||||| |||||||||||||| |||||| || ||| |
|
|
| T |
19333476 |
gaacttgagtttctcagttacttggatttgagtctgaatgtatttgacgtgataataattccatccattccacacaacatcacacattcatctaaacttg |
19333575 |
T |
|
| Q |
123 |
tgtgcattgacttatcc |
139 |
Q |
| |
|
| | | ||||||||||| |
|
|
| T |
19333576 |
tataccttgacttatcc |
19333592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 19413681 - 19413798
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| | |||| || |||||||||||| | ||| ||||||| ||||||| |||||| || ||| |
|
|
| T |
19413681 |
gaacttgagtttctcagttacttggatttgagccacaattattttggtgagataagaattccaactattaaacacaatatcacacattcatctaaacttg |
19413780 |
T |
|
| Q |
123 |
tgtgcattgacttatcct |
140 |
Q |
| |
|
| | | |||||||||||| |
|
|
| T |
19413781 |
tttaccttgacttatcct |
19413798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 18164641 - 18164757
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| | ||| | ||||||| ||||||||| |||| |||||||||||| |||||| |||||| || ||| |
|
|
| T |
18164641 |
gaacttgagtttctcagtcacttggatttgagtcttaatgattttgatgtgataagaattacatcaattcaacacaacttcacacattcatctaaacttg |
18164740 |
T |
|
| Q |
123 |
tgtgcattgacttatcc |
139 |
Q |
| |
|
| | | ||||||||||| |
|
|
| T |
18164741 |
tctaccttgacttatcc |
18164757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 19392617 - 19392707
Alignment:
| Q |
24 |
aacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatc |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| | ||||| | |||||||||||| ||||||||| ||||||||| | |||||| |
|
|
| T |
19392617 |
aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatc |
19392707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 24493939 - 24493848
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatc |
114 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || | |||||| ||||| |||||| |||||||| |||||||||||| |||||| |
|
|
| T |
24493939 |
gaacttgagtttcttagttacttggacttgagcgataacgattttgatttgataagtattccaaccattcaaaacaacatcacacattcatc |
24493848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 19350888 - 19350972
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacac |
107 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| ||| | ||||||| |||| ||||||||||||||| | |||||||||| |
|
|
| T |
19350888 |
gaacttgagtttctcagttacttgggtttgagtgagaatcattttgatgtgataactattccatccattcaaaaaaacatcacac |
19350972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 23 - 423
Target Start/End: Original strand, 8458964 - 8459355
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| | |||| ||||||| |
|
|
| T |
8458964 |
gaacttgagtttctgagttacttggatttgagcttacataaatttgatgtgataagaattccatcgattcaacacaacatcacacatgcatctaaccttt |
8459063 |
T |
|
| Q |
123 |
tgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatgg |
222 |
Q |
| |
|
|| | |||||||||||| | || | | || || | || |||||| ||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
8459064 |
tgcaccttgacttatcctacaccgtagttactgctttgaa------taatcttcaatggctttctccactttcttccttaaaaaatctcaacctcaatgg |
8459157 |
T |
|
| Q |
223 |
aattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctg |
322 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| ||||||| |||| || ||||| ||||| || ||| ||| || || ||||||| | |
|
|
| T |
8459158 |
aattgatcttcataaggaaactaattggcttcaagcagtggctacactttcttccctattagagttacacttaagtaagtgtaaactgaacaact---tt |
8459254 |
T |
|
| Q |
323 |
atcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatc |
422 |
Q |
| |
|
||||| |||||| |||| |||||||||||||||||| ||||||||||| ||||||| ||| | ||||| |||| |||||| ||||||||||||||| |
|
|
| T |
8459255 |
atcaacccatctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcacatctcctttacctaatgggttttttaatc |
8459354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 378
Target Start/End: Complemental strand, 451 - 94
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| |||| | ||||| | |||||| ||||| || |||||||||||||||||||||||| || ||| |
|
|
| T |
451 |
gaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaacatcacacgttcatctaaacttg |
352 |
T |
|
| Q |
123 |
tgtgcattgacttatcct---taaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaa |
219 |
Q |
| |
|
| | | ||||||||||| | | | | | |||||| |||||||||| |||||||||| ||||| ||||||| |||||| ||||||||| ||| | |
|
|
| T |
351 |
tctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatcctta-aatatctcatccttat |
253 |
T |
|
| Q |
220 |
tggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttc |
319 |
Q |
| |
|
||| |||||||||| |||||||||||| |||||||||| ||| | ||| |||||||||| ||||||||||| ||||| || || |||||||||||| |
|
|
| T |
252 |
tgggattgatcttcgtaaggaaaccaactggcttcaagcagtaagtacctttccttcactattagaattacaactgagttactgtaaactaaacaacttc |
153 |
T |
|
| Q |
320 |
ctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttc |
378 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
152 |
atgatcaatccatctattgagtatttcaatttgtcttcacttgtaactctttatctttc |
94 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 23 - 378
Target Start/End: Original strand, 4879 - 5237
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatcgaaccttt |
122 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| |||| | ||||| | |||||| ||||| || |||||||||||||||||||||||| || ||| |
|
|
| T |
4879 |
gaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaacatcacacgttcatctaaacttg |
4978 |
T |
|
| Q |
123 |
tgtgcattgacttatcct---taaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaa |
219 |
Q |
| |
|
| | | |||||||| || | | | | | |||||| |||||||||| |||||||||| ||||| ||||||| ||||| ||||||||| ||| | |
|
|
| T |
4979 |
tctaccttgacttagcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttag |
5078 |
T |
|
| Q |
220 |
tggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttc |
319 |
Q |
| |
|
||| |||||||||| |||||||||||| |||||||||| ||| | ||| ||||||||||| ||||||||||| ||||| || || |||||||||||| |
|
|
| T |
5079 |
tgggattgatcttcgtaaggaaaccaactggcttcaagcagtaagtacccttccttcactattagaattacaactgagttactgtaaactaaacaacttc |
5178 |
T |
|
| Q |
320 |
ctgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttc |
378 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
5179 |
atgatcaaaccatctattgagtatttcaatttgtcttcacttgtaactctttatctttc |
5237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 161 - 427
Target Start/End: Complemental strand, 2710959 - 2710693
Alignment:
| Q |
161 |
cacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtag |
260 |
Q |
| |
|
||||| |||| |||| ||||| |||||||||||||||| || ||||||||||||||| || |||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
2710959 |
cacatagataatcttaattggctttctccactttcttctttgaaatatctcaacctcagcggtattgatcttcataaagaaaccaattggcttcaaatag |
2710860 |
T |
|
| Q |
261 |
tgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtcttcaat |
360 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||| | || || |||| ||||||| ||||||| || ||||||| |||||||||||||||||| | |
|
|
| T |
2710859 |
tgaatacacttccttcactattagaagtacaattgtctttttgtaaactaagcaacttcatgatcaacccgtctattgcatatttgaatttgtcttcact |
2710760 |
T |
|
| Q |
361 |
tgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctcacc |
427 |
Q |
| |
|
| |||||||| | ||||| ||| | |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
2710759 |
tataactcttgaactttcttggaacaacttcacctctcctttaccaaatgggttttttaatctcacc |
2710693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 24 - 378
Target Start/End: Original strand, 15531843 - 15532185
Alignment:
| Q |
24 |
aacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaaca---tcacacgttcatcgaacct |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| | ||||||| |||| ||||||||||||||| | |||| |||||| |||||| ||||| |
|
|
| T |
15531843 |
aacttgagtttcttagttacttcgatttgagtcggaatgattttgatgtgctaagcattccatccattcaaaataacaatatcacacattcatctaacct |
15531942 |
T |
|
| Q |
121 |
tttgtgcattgacttatccttaaatcaaggtccaactctgcacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaat |
220 |
Q |
| |
|
||||| | ||||||||||||||||| |||| | |||||||||| |||| ||||| ||||||||||||| ||||| ||||||||||||| ||| |
|
|
| T |
15531943 |
tttgtaccttgacttatccttaaatggtggtc------ttcacatggataatcttgattggctttctccactttcatccttgaaatatctcaaccttaat |
15532036 |
T |
|
| Q |
221 |
ggaattgatcttcataaggaaaccaattggcttcaagtagtgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcc |
320 |
Q |
| |
|
| ||||||||||||||||||||||| ||| |||||| || || ||||||||||||||| ||||| ||| |||||||| || || || ||||||||| |
|
|
| T |
15532037 |
tggattgatcttcataaggaaaccaactggattcaagcagagagtacacttccttcactattagatttaaggttgagtgactgtaaactgaacaacttc- |
15532135 |
T |
|
| Q |
321 |
tgatcaatccatctattgactatttgaatttgtcttcaattgtaactctttatctttc |
378 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
15532136 |
--------ccatctatcgagtatttgaatttgtcttcacttgtaactcttgatctttc |
15532185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 161 - 427
Target Start/End: Complemental strand, 13667254 - 13666997
Alignment:
| Q |
161 |
cacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtag |
260 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| |||||||| | ||||| |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
13667254 |
cacattgataatcttcattggttttctccattttcttccttgaaatatctccggtttaatggcattgatcttcataaggaaactaattggctccaagtag |
13667155 |
T |
|
| Q |
261 |
tgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgactatttgaatttgtcttcaat |
360 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| || || ||||| ||||||||| |||||| |||| ||||||||||||||||| | |
|
|
| T |
13667154 |
tgaatacacttccttcacaattagaattacggttgagaggttgtaacctgaacaacttc---------ccatctcttgagtatttgaatttgtcttcgct |
13667064 |
T |
|
| Q |
361 |
tgtaactctttatctttcaaacaacgatttcacctctcacttacctgatgggttttttaatctcacc |
427 |
Q |
| |
|
||||||||| ||||||| | ||| | ||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
13667063 |
ggtaactcttgatctttctgaaaacaacttcacctctcatatacctaatgagttttttaatctcacc |
13666997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 2509635 - 2509754
Alignment:
| Q |
172 |
tcttcattggttttctccactttcttccttacaatatctcaacct------caatggaattgatcttcataaggaaaccaattggcttcaagtagtgaat |
265 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||| || | ||||||||||||||| ||||||||||| | |||||||||| | |
|
|
| T |
2509635 |
tcttcattggctttctccactttcttccttaaaatatctcaaccttggtttcagtaccattgatcttcataagaaaaccaattgggtacaagtagtgagt |
2509734 |
T |
|
| Q |
266 |
acacttccttcactgttaga |
285 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
2509735 |
acacttccttcactattaga |
2509754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 13667395 - 13667304
Alignment:
| Q |
23 |
gaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcaacacaacatcacacgttcatc |
114 |
Q |
| |
|
|||||| ||||||| || || ||||||||||| ||| ||||||||| |||| |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
13667395 |
gaacttaagtttctcagctatttggatttgagtcataatgaatttgatgtgataaaaatttcatccattcaacacaacatcacaaattcatc |
13667304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 296
Target Start/End: Original strand, 16436013 - 16436148
Alignment:
| Q |
161 |
cacatggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtag |
260 |
Q |
| |
|
|||||||||| |||| | ||| |||||||| |||||| | | ||||||| ||||||| ||| ||||||||| | |||| ||||||||||||||||| | |
|
|
| T |
16436013 |
cacatggataatcttgactgggtttctccattttcttgttgaaaatatctaaacctcagtgggattgatcttaacaaggcaaccaattggcttcaagcaa |
16436112 |
T |
|
| Q |
261 |
tgaatacacttccttcactgttagaattacagttga |
296 |
Q |
| |
|
|| || |||||||| |||||||||||||| |||| |
|
|
| T |
16436113 |
tggctaagcttccttccctgttagaattacaattga |
16436148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 296
Target Start/End: Complemental strand, 16436795 - 16436664
Alignment:
| Q |
165 |
tggatagtcttcattggttttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaaccaattggcttcaagtagtgaa |
264 |
Q |
| |
|
|||||| |||| | ||| ||||| || |||||| |||| |||||||||| |||| ||| ||||||||| || | ||||||||||||||||| | || |
|
|
| T |
16436795 |
tggataatcttgactgggtttctacattttcttgcttaaaatatctcaatctcagtggtattgatcttagcaaagcaaccaattggcttcaagcaatggc |
16436696 |
T |
|
| Q |
265 |
tacacttccttcactgttagaattacagttga |
296 |
Q |
| |
|
|| |||||||| || ||||||||||| |||| |
|
|
| T |
16436695 |
taagcttccttccctattagaattacaattga |
16436664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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