View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_high_42 (Length: 423)

Name: NF19878_high_42

Description: NF19878

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19878_high_42

[»] chr1 (2 HSPs)

Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 232; E-Value: 1e-128

Query Start/End: Original strand, 176 - 423

Target Start/End: Original strand, 46797283 - 46797530

Alignment:

Q	176	ttgtgccataacaaaaatctgtactcctctttcgtgtcaaatagctcaacgacgaaactcaagcactaaagtgcaaataaacgtgacatttcgggtttgg	275	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46797283	ttgtgccataacaaaaatttgtactcctctttcgtgtcaaatagctcaacgacgaaactcaaacactaaagtgcaaataaacgtgacatttcgggtttga	46797382	T

Q	276	attcgcgctcaacatattaaatatatctctaacattttacggtctaaattgttttacacagacatttacattcattttatatagaagtatatatgctttg	375	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46797383	attcgcgctcaacatattaaatatatctccaacattttacggtctaaattgttttacacagacatttacattcattttatatagaagtatatatgctttg	46797482	T

Q	376	agtatgagtatacttttggattaagttttttgtttaaaaatataatat	423	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46797483	agtatgagtatacttttggattaagttttttgtttaaaaatataatat	46797530	T

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Target: chr1; HSP #2

Raw Score: 42; E-Value: 0.00000000000001

Query Start/End: Original strand, 53 - 120

Target Start/End: Original strand, 46797164 - 46797230

Alignment:

Q	53	gggcgtaagccctcttttactaccaacnnnnnnntagtgttatttatatgttaaaacaactcaattgc	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46797164	gggcgtaagccctcttttactaccaacaaaaaa-tagtgttatttatatgttaaaacaactcaattgc	46797230	T

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