View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_47 (Length: 406)
Name: NF19878_high_47
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 45404879 - 45404500
Alignment:
| Q |
11 |
caaagggaacaagaacaaggtataacatggtagctactgcaacagcttcttcttctgtttctgaggttgaacatgagcaagaagaagttgctatgagctt |
110 |
Q |
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| T |
45404879 |
caaagagaacaagaacaaggtataacatggtagctactgcaacagcttcttcttctgtttctgaggttgaacatgagcaagaagaagttgctatgagctt |
45404780 |
T |
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| Q |
111 |
gattatgcttagtagagatgttagtccttggagtggtcttcattttcttgctgctgaatcctctgataataattctgtttactttgaagctcgatcttcc |
210 |
Q |
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| T |
45404779 |
gattatgcttagtagagatgttagtccttggagtggtcttcattatcttgctgctgaatcctctgataataattctgtttactttgaagctcgatcttcc |
45404680 |
T |
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| Q |
211 |
gttcgaactaatcttgttactaaatttgatgctaatattgcaaagttgatgaagcaaagtgagaacaagaagtatgaattaggcaattctgtttccaaga |
310 |
Q |
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| T |
45404679 |
gttcgaactaatcttgttactaaatttgatgctaatattgcaaagttgatgaagcaaagtgagaacaagaagtatgagttaggcaattctgtttccaaga |
45404580 |
T |
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| Q |
311 |
atttcaagttcaaagggaaaagtttagagattttggatactgaaaaaggattcaagatgatcaaaactggagtttccatc |
390 |
Q |
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| T |
45404579 |
atttcaagttcaaagggaaaagtttagagattttggatactgaaaaaggattcaagatgatcaaaactggagtttccatc |
45404500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 7234387 - 7234334
Alignment:
| Q |
88 |
caagaagaagttgctatgagcttgattatgcttagtagagatgttagtccttgg |
141 |
Q |
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| T |
7234387 |
caagaagaggttgctatgagtttgataatgcttagtagagatgtaagaccttgg |
7234334 |
T |
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