View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_high_51 (Length: 396)

Name: NF19878_high_51
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19878_high_51
NF19878_high_51
[»] chr8 (14 HSPs)
chr8 (17-214)||(25092379-25092580)
chr8 (17-172)||(25057335-25057490)
chr8 (280-396)||(25092197-25092313)
chr8 (280-396)||(17884798-17884914)
chr8 (285-396)||(8362031-8362142)
chr8 (280-396)||(22997237-22997353)
chr8 (281-392)||(4931960-4932071)
chr8 (172-214)||(8362212-8362254)
chr8 (172-214)||(17884687-17884729)
chr8 (172-209)||(23524999-23525036)
chr8 (172-200)||(4932149-4932177)
chr8 (172-200)||(16250322-16250350)
chr8 (172-200)||(22997432-22997460)
chr8 (172-200)||(37251448-37251476)
[»] chr5 (5 HSPs)
chr5 (280-393)||(23547294-23547407)
chr5 (280-396)||(4956182-4956303)
chr5 (280-396)||(26447645-26447766)
chr5 (172-200)||(7928350-7928378)
chr5 (172-200)||(29866157-29866185)
[»] chr6 (7 HSPs)
chr6 (292-396)||(15683224-15683328)
chr6 (281-396)||(21058681-21058796)
chr6 (281-396)||(15872694-15872809)
chr6 (280-396)||(4848960-4849081)
chr6 (168-200)||(4791926-4791958)
chr6 (172-200)||(21058874-21058902)
chr6 (172-200)||(23410324-23410352)
[»] chr2 (5 HSPs)
chr2 (280-396)||(27203135-27203251)
chr2 (280-396)||(27858282-27858398)
chr2 (280-392)||(3572817-3572929)
chr2 (170-214)||(27203025-27203069)
chr2 (170-214)||(27858172-27858216)
[»] scaffold0229 (1 HSPs)
scaffold0229 (280-396)||(24720-24836)
[»] chr4 (5 HSPs)
chr4 (280-396)||(14249009-14249124)
chr4 (280-396)||(42616480-42616596)
chr4 (281-392)||(13914979-13915090)
chr4 (172-214)||(14248901-14248943)
chr4 (172-200)||(13914875-13914903)
[»] chr1 (5 HSPs)
chr1 (280-396)||(1365916-1366032)
chr1 (280-396)||(40702182-40702298)
chr1 (280-396)||(42025631-42025747)
chr1 (172-214)||(42025523-42025565)
chr1 (171-200)||(40702378-40702407)
[»] chr3 (8 HSPs)
chr3 (280-396)||(37197541-37197657)
chr3 (281-396)||(20776235-20776350)
chr3 (280-395)||(38357885-38357994)
chr3 (281-392)||(35683585-35683696)
chr3 (280-357)||(45720232-45720309)
chr3 (170-200)||(10019156-10019186)
chr3 (171-209)||(19817679-19817717)
chr3 (172-214)||(38358060-38358102)
[»] chr7 (6 HSPs)
chr7 (280-396)||(12976142-12976263)
chr7 (280-396)||(33940280-33940401)
chr7 (280-396)||(18293907-18294028)
chr7 (281-392)||(26368741-26368852)
chr7 (171-200)||(18294110-18294139)
chr7 (172-200)||(33940483-33940511)
[»] scaffold0268 (1 HSPs)
scaffold0268 (172-200)||(20146-20174)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 25092580 - 25092379
Alignment:
Q  17 attgcatattcagagggagcaattcaatagtaaaatgggtttccgtggtatataga-gca---attcatcatgaacaagtgccatctttctaaactttta 112  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||   |||||||||||||||||||| ||||||||||||||||    
T  25092580 attgcatattcagagggagcaattcaatagtaagatgggtttccgtggtatatagatgcagttattcatcatgaacaagtgccgtctttctaaactttta 25092481  T
Q  113 atttgaattgttttaatgctttaaatacaatgttgaaagataagcatcattgtattaatactagcttggaaacccgtgccaagcacggattaaaattccg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25092480 atttgaattgttttaatgctttaaatacaatgttgaaagataagcatcattgtattaatactagcttggaaacccgtgccaagcaaggattaaaattccg 25092381  T
Q  213 ac 214  Q
    ||    
T  25092380 ac 25092379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 25057490 - 25057335
Alignment:
Q  17 attgcatattcagagggagcaattcaatagtaaaatgggtttccgtggtatatagagcaattcatcatgaacaagtgccatctttctaaacttttaattt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25057490 attgcatattcagagggagcaattcaatagtaaaatgggtttccgtggtatatagagcaattcatcatgaacaagtgccatctttctaaaattttaattt 25057391  T
Q  117 gaattgttttaatgctttaaatacaatgttgaaagataagcatcattgtattaata 172  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25057390 gaattgttttaatgctttaaataccatgttgaaagataagcatcattgtattaata 25057335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 25092313 - 25092197
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25092313 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 25092214  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||||||||||||||||    
T  25092213 ttaacggatgtaacgtc 25092197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 17884798 - 17884914
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  17884798 caataaaacgcatcgttatcgtattttcgattgcgtattatatacaaatatcaatgtgtatatagttatttggattttcgcatcgttaaacaggaatgat 17884897  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||||||||||||||||    
T  17884898 ttaacggatgtaacgtc 17884914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 285 - 396
Target Start/End: Complemental strand, 8362142 - 8362031
Alignment:
Q  285 aaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatttaac 384  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8362142 aaacacatcgttatcgtattttcaattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatttaac 8362043  T
Q  385 ggatgtaacgtc 396  Q
    ||||||||||||    
T  8362042 ggatgtaacgtc 8362031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 22997353 - 22997237
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||    
T  22997353 caataaaatgcatcattatcgtattttcgattgcatattatatacaaatatcaacgcgtatatagttatttgaattttcgtatcgttgaacatgaatgat 22997254  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||| ||||||||||||    
T  22997253 ttaatggatgtaacgtc 22997237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 281 - 392
Target Start/End: Complemental strand, 4932071 - 4931960
Alignment:
Q  281 aataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatt 380  Q
    |||| ||| |||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  4932071 aatagaacacatcattatcgtattttcgattgtatattatatacaaatatcaacgtttatatagttatttggattttcgtatcgttaaacaggaatgatt 4931972  T
Q  381 taacggatgtaa 392  Q
    ||| ||||||||    
T  4931971 taatggatgtaa 4931960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 8362254 - 8362212
Alignment:
Q  172 actagcttggaaacccgtgccaagcacggattaaaattccgac 214  Q
    |||||||||||||||||||||||||||||  || |||||||||    
T  8362254 actagcttggaaacccgtgccaagcacgggctagaattccgac 8362212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 17884687 - 17884729
Alignment:
Q  172 actagcttggaaacccgtgccaagcacggattaaaattccgac 214  Q
    |||||||||||||||||||||||||||||  || |||||||||    
T  17884687 actagcttggaaacccgtgccaagcacgggctagaattccgac 17884729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 23524999 - 23525036
Alignment:
Q  172 actagcttggaaacccgtgccaagcacggattaaaatt 209  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  23524999 actagcttggaaacccgtgccaagcacgggttagaatt 23525036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 4932177 - 4932149
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  4932177 actagcttggaaacccgtgccaagcacgg 4932149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 16250350 - 16250322
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  16250350 actagcttggaaacccgtgccaagcacgg 16250322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 22997460 - 22997432
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  22997460 actagcttggaaacccgtgccaagcacgg 22997432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 37251476 - 37251448
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  37251476 actagcttggaaacccgtgccaagcacgg 37251448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 280 - 393
Target Start/End: Complemental strand, 23547407 - 23547294
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23547407 caataaaacgcatcgttatcgtattttcaattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacaggaatgat 23547308  T
Q  380 ttaacggatgtaac 393  Q
    ||||||||||||||    
T  23547307 ttaacggatgtaac 23547294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 4956182 - 4956303
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgca-----tcgttaaacatga 374  Q
    ||||| ||||||| |||||||||||||  |||||||||||| |||||||||||| | ||||||||||||| ||||||||| |     |||||||||||||    
T  4956182 caatagaacgcatagttatcgtattttcaattgcatattatgtacaaatatcaatgcgtatatagttattaggattttcgtatagtgtcgttaaacatga 4956281  T
Q  375 atgatttaacggatgtaacgtc 396  Q
    ||||||||||||||||||||||    
T  4956282 atgatttaacggatgtaacgtc 4956303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 26447766 - 26447645
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgca-----tcgttaaacatga 374  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||||| | ||||| | ||||| ||||||||| |     |||||||||| ||    
T  26447766 caatagaacgcatcgttatcgtattttcaattgcatattatatacaaatatcaatgcgtatacaattattaggattttcgtatagtgtcgttaaacagga 26447667  T
Q  375 atgatttaacggatgtaacgtc 396  Q
    ||||||||||||||||||||||    
T  26447666 atgatttaacggatgtaacgtc 26447645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 7928350 - 7928378
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  7928350 actagcttggaaacccgtgccaagcacgg 7928378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 29866185 - 29866157
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  29866185 actagcttggaaacccgtgccaagcacgg 29866157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 292 - 396
Target Start/End: Complemental strand, 15683328 - 15683224
Alignment:
Q  292 tcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatttaacggatgta 391  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15683328 tcgttatcgtattttcgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatttaacggatgta 15683229  T
Q  392 acgtc 396  Q
    |||||    
T  15683228 acgtc 15683224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 281 - 396
Target Start/End: Complemental strand, 21058796 - 21058681
Alignment:
Q  281 aataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatt 380  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  21058796 aatagaacgcatcgttatcgtattttcgattgtatattatatacaaatatcaacgtttatatagttatttggattttcgtatcattaaacatgaatgatt 21058697  T
Q  381 taacggatgtaacgtc 396  Q
    ||| |||| |||||||    
T  21058696 taatggatctaacgtc 21058681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 281 - 396
Target Start/End: Original strand, 15872694 - 15872809
Alignment:
Q  281 aataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatt 380  Q
    |||| |||||||  |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||    
T  15872694 aatagaacgcattattatcgtattttcgattgtatattatatacaaatatcaacgtttatatagttatttgaatttttgtatcgttaaacatgaatgatt 15872793  T
Q  381 taacggatgtaacgtc 396  Q
    | | ||||||||||||    
T  15872794 tcatggatgtaacgtc 15872809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 4848960 - 4849081
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgca-----tcgttaaacatga 374  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||||| | ||||||||||||| ||||||||| |     |||||||||| ||    
T  4848960 caatagaacgcatcgttatcgtattttcaattgcatattatatacaaatatcaatgcgtatatagttattaggattttcgtatagtgtcgttaaacagga 4849059  T
Q  375 atgatttaacggatgtaacgtc 396  Q
    ||||||||||||||||||||||    
T  4849060 atgatttaacggatgtaacgtc 4849081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 4791958 - 4791926
Alignment:
Q  168 taatactagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||||||    
T  4791958 taatactagcttggaaacccgtgccaagcacgg 4791926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 21058902 - 21058874
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  21058902 actagcttggaaacccgtgccaagcacgg 21058874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 23410352 - 23410324
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  23410352 actagcttggaaacccgtgccaagcacgg 23410324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 27203135 - 27203251
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27203135 caataaaacacatcgttatcgtattttcgattgcatattatatacaaatatcaacatgtatatagttatttggattttcgaatcgttaaacatgaatgat 27203234  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||||||||||||||||    
T  27203235 ttaacggatgtaacgtc 27203251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 27858282 - 27858398
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27858282 caataaaacacatcgttatcgtattttcgattgcatattatatacaaatatcaacatgtatatagttatttggattttcgaatcgttaaacatgaatgat 27858381  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||||||||||||||||    
T  27858382 ttaacggatgtaacgtc 27858398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 280 - 392
Target Start/End: Complemental strand, 3572929 - 3572817
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    ||||| ||||||||||||| ||||| |  ||||||||||||||| |||||||||||| |||||| ||||||||||||| | |||  |||||   ||||||    
T  3572929 caatataacgcatcgttattgtattatgtattgcatattatataaaaatatcaacgtatatatacttatttggatttttgtatcaataaacggaaatgat 3572830  T
Q  380 ttaacggatgtaa 392  Q
    |||||||| ||||    
T  3572829 ttaacggacgtaa 3572817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 27203025 - 27203069
Alignment:
Q  170 atactagcttggaaacccgtgccaagcacggattaaaattccgac 214  Q
    ||||||||||||||| |||||||||||||||  || |||||||||    
T  27203025 atactagcttggaaatccgtgccaagcacgggctagaattccgac 27203069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 27858172 - 27858216
Alignment:
Q  170 atactagcttggaaacccgtgccaagcacggattaaaattccgac 214  Q
    ||||||||||||||| |||||||||||||||  || |||||||||    
T  27858172 atactagcttggaaatccgtgccaagcacgggctagaattccgac 27858216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 24720 - 24836
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    ||||||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24720 caataaaacgcattgttatcatattttcgattacatattatatacaaatatcaacgtgtatatagttatttggattttcgtatcgttaaacatgaatgat 24819  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||||||||||||||||    
T  24820 ttaacggatgtaacgtc 24836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 14249009 - 14249124
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14249009 caataaaacgcatcgttatcgtattttcaattgcatattat-tacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacaggaatgat 14249107  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||||||||||||||||    
T  14249108 ttaacggatgtaacgtc 14249124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 42616596 - 42616480
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    ||||||||||||| |||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  42616596 caataaaacgcatagttatcgtattttcaaatgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacaggaatggt 42616497  T
Q  380 ttaacggatgtaacgtc 396  Q
    ||||||| |||||||||    
T  42616496 ttaacggttgtaacgtc 42616480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 281 - 392
Target Start/End: Original strand, 13914979 - 13915090
Alignment:
Q  281 aataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatt 380  Q
    |||| |||||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  13914979 aatagaacgcatcattatcgtattttcgattgtatattatatacaaatatcaacgtttatatagttatttggattttcgtatcgttaaacaggaatgatt 13915078  T
Q  381 taacggatgtaa 392  Q
    ||| ||||||||    
T  13915079 taatggatgtaa 13915090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 14248901 - 14248943
Alignment:
Q  172 actagcttggaaacccgtgccaagcacggattaaaattccgac 214  Q
    |||||||||||||||||||||||||||||  || |||||||||    
T  14248901 actagcttggaaacccgtgccaagcacgggctagaattccgac 14248943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 13914875 - 13914903
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  13914875 actagcttggaaacccgtgccaagcacgg 13914903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 1366032 - 1365916
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    ||||||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1366032 caataaaacgcattgttatcatattttcgattacatattatatacaaatatcaacgtgtatatagttatttggattttcgtatcgttaaacatgaatgat 1365933  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||||||||||||||||    
T  1365932 ttaacggatgtaacgtc 1365916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 40702298 - 40702182
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    |||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  40702298 caataaaacgcatatttatcgtattttcaattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaattgt 40702199  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||||||||||||||||    
T  40702198 ttaacggatgtaacgtc 40702182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 42025631 - 42025747
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  42025631 caataaaatgcatcgttatcgtattttcaattgcatattatatacaaatatcaacgtgtatatagttatttggatttttgcatcgttaaacaggaatgat 42025730  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||||||||||| ||||    
T  42025731 ttaacggatgtatcgtc 42025747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 42025523 - 42025565
Alignment:
Q  172 actagcttggaaacccgtgccaagcacggattaaaattccgac 214  Q
    |||||||||||||||||||||||||||||  || |||||||||    
T  42025523 actagcttggaaacccgtgccaagcacgggctagaattccgac 42025565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 40702407 - 40702378
Alignment:
Q  171 tactagcttggaaacccgtgccaagcacgg 200  Q
    ||||||||||||||||||||||||||||||    
T  40702407 tactagcttggaaacccgtgccaagcacgg 40702378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 37197657 - 37197541
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||| |||||||    
T  37197657 caataaaacgcatcgttatcgtattttcgattgcatattatatacaaatatcaatgtgtacatatttatttggcttttcgcatcgttaaacaggaatgat 37197558  T
Q  380 ttaacggatgtaacgtc 396  Q
    |||||||||||||||||    
T  37197557 ttaacggatgtaacgtc 37197541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 281 - 396
Target Start/End: Original strand, 20776235 - 20776350
Alignment:
Q  281 aataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatt 380  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  20776235 aataaaatgcatcgttatcgtattttcaattgcatattatatacaaatatcaacgtgtatatagttatttggatttttgcatcgttaaacaagaatgatt 20776334  T
Q  381 taacggatgtaacgtc 396  Q
    |||| |||||||||||    
T  20776335 taacagatgtaacgtc 20776350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 280 - 395
Target Start/End: Complemental strand, 38357994 - 38357885
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgat 379  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||      |||||| ||||||||||||||||||| |||||||    
T  38357994 caataaaacgcatcgttatcgtattttcaattgcatattatatacaaatatcaacgtgta------tatttgaattttcgcatcgttaaacaggaatgat 38357901  T
Q  380 ttaacggatgtaacgt 395  Q
    ||||||||||||||||    
T  38357900 ttaacggatgtaacgt 38357885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 281 - 392
Target Start/End: Original strand, 35683585 - 35683696
Alignment:
Q  281 aataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatt 380  Q
    |||| |||||||| ||||||||||||  |||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||    
T  35683585 aatagaacgcatcattatcgtattttcaattgtatattatatacaaatatcaacgtttatatagttatttggattttcgtatcgttaaacataaatgatt 35683684  T
Q  381 taacggatgtaa 392  Q
    ||| ||||||||    
T  35683685 taatggatgtaa 35683696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 45720232 - 45720309
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggatttt 357  Q
    ||||| ||||||||||||| ||||| || ||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  45720232 caatataacgcatcgttattgtattatttattgcatattatataaaaatatcaacgtatatttacttatttggatttt 45720309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 10019156 - 10019186
Alignment:
Q  170 atactagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||||    
T  10019156 atactagcttggaaacccgtgccaagcacgg 10019186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 19817717 - 19817679
Alignment:
Q  171 tactagcttggaaacccgtgccaagcacggattaaaatt 209  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  19817717 tactagcttggaaacccgtgccaagcacgggttagaatt 19817679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 38358102 - 38358060
Alignment:
Q  172 actagcttggaaacccgtgccaagcacggattaaaattccgac 214  Q
    |||||||||||||||||||||||||||||  || |||||||||    
T  38358102 actagcttggaaacccgtgccaagcacgggctagaattccgac 38358060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 12976142 - 12976263
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgca-----tcgttaaacatga 374  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | ||||||||||||| ||||||||| |     |||||||||| ||    
T  12976142 caataaaacgcatagttatcgtattttcaattgcatattatatacaaatatcaatgagtatatagttattaggattttcgtatagtgtcgttaaacagga 12976241  T
Q  375 atgatttaacggatgtaacgtc 396  Q
    ||||||||||||||||||||||    
T  12976242 atgatttaacggatgtaacgtc 12976263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 33940401 - 33940280
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgca-----tcgttaaacatga 374  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||||| | ||||||||||||| ||||||||| |     |||||||||| ||    
T  33940401 caatagaacgcatcgttatcgtattttcaattgcatattatatacaaatatcaatgcgtatatagttattaggattttcgtatagtgtcgttaaacagga 33940302  T
Q  375 atgatttaacggatgtaacgtc 396  Q
    ||||||||||||||||||||||    
T  33940301 atgatttaacggatgtaacgtc 33940280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 18294028 - 18293907
Alignment:
Q  280 caataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgca-----tcgttaaacatga 374  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||||| | ||||||||||||| ||||||| | |     |||||||||| ||    
T  18294028 caatagaacgcatcgttatcgtattttcaattgcatattatatacaaatatcaatgcgtatatagttattaggatttttgtatggtgtcgttaaacagga 18293929  T
Q  375 atgatttaacggatgtaacgtc 396  Q
    ||||||||||||||||||||||    
T  18293928 atgatttaacggatgtaacgtc 18293907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 392
Target Start/End: Complemental strand, 26368852 - 26368741
Alignment:
Q  281 aataaaacgcatcgttatcgtatttttgattgcatattatatacaaatatcaacgtgtatatagttatttggattttcgcatcgttaaacatgaatgatt 380  Q
    |||| ||||||||||||| ||||| |  ||||||||||||||| |||||||||||| |||||| ||||||||||||| | |||  ||||||  || ||||    
T  26368852 aatataacgcatcgttattgtattatgtattgcatattatataaaaatatcaacgtatatatacttatttggatttttgtatcaataaacagaaaagatt 26368753  T
Q  381 taacggatgtaa 392  Q
    ||||||||||||    
T  26368752 taacggatgtaa 26368741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 18294139 - 18294110
Alignment:
Q  171 tactagcttggaaacccgtgccaagcacgg 200  Q
    ||||||||||||||||||||||||||||||    
T  18294139 tactagcttggaaacccgtgccaagcacgg 18294110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 33940511 - 33940483
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  33940511 actagcttggaaacccgtgccaagcacgg 33940483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 20174 - 20146
Alignment:
Q  172 actagcttggaaacccgtgccaagcacgg 200  Q
    |||||||||||||||||||||||||||||    
T  20174 actagcttggaaacccgtgccaagcacgg 20146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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