View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_high_52 (Length: 395)

Name: NF19878_high_52
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19878_high_52
NF19878_high_52
[»] chr7 (2 HSPs)
chr7 (10-384)||(30434066-30434434)
chr7 (31-95)||(12742646-12742710)
[»] chr1 (4 HSPs)
chr1 (158-287)||(52226891-52227020)
chr1 (288-384)||(52227166-52227262)
chr1 (184-284)||(47805425-47805525)
chr1 (327-384)||(47805654-47805711)
[»] scaffold1348 (1 HSPs)
scaffold1348 (31-95)||(1581-1645)
[»] scaffold0061 (1 HSPs)
scaffold0061 (31-95)||(4007-4071)
[»] chr5 (3 HSPs)
chr5 (184-260)||(19986665-19986741)
chr5 (31-77)||(16800299-16800345)
chr5 (346-384)||(19985712-19985750)
[»] chr3 (2 HSPs)
chr3 (31-95)||(17194594-17194658)
chr3 (31-95)||(15604846-15604911)
[»] chr8 (1 HSPs)
chr8 (31-95)||(24638833-24638897)


Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 30434434 - 30434066
Alignment:
Q  10 attatactacataatttaatttatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttagcagggttcaagagg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434434 attatactacataatttaatttatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttagcagggttcaagagg 30434335  T
Q  110 cgcagccgcagccgcagaagaacctcgtgaattcaacaatggccaggatcaaagttcacgagttgaggcagaagaccaaagctgatctattggctcagct 209  Q
    ||||| |||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434334 cgcagtcgcag------aagaacctcgtgaattcaacaatggccaggatcaaagttcacgagttgaggcagaagaccaaagctgatctattggctcagct 30434241  T
Q  210 caaagacctcaaagctgaactagctttgctccatgttgctaaggccactgggggtgcacccaacaatctctccaaaattaaggaggtaaggttgtcgatt 309  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30434240 caaagacctcaaagctgaactagctttgctccgtgttgctaaggccactcgggctgcacccaacaatctctccaaaattaaggaggtaaggttgtcgatt 30434141  T
Q  310 gctcaggttttgacagtgatttcccagaagcggaaagctgcattgagggaagtttacaagaacaagaagtatttg 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434140 gctcaggttttgacagtgatttcccagaagcggaaagctgcattgagggaagtttacaagaacaagaagtatttg 30434066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 12742646 - 12742710
Alignment:
Q  31 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttag 95  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  12742646 tatgtgatgcatgaaatgtatgtttagttagcgcatgtatgagatgtatgcttaacttgttttag 12742710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 158 - 287
Target Start/End: Original strand, 52226891 - 52227020
Alignment:
Q  158 tcaaagttcacgagttgaggcagaagaccaaagctgatctattggctcagctcaaagacctcaaagctgaactagctttgctccatgttgctaaggccac 257  Q
    |||| ||||| |||||||||||||| | |||| ||||||| ||||||||||||||||| ||||||||||||||  |||||||||  |||||||||| |||    
T  52226891 tcaaggttcatgagttgaggcagaaaaacaaaactgatctgttggctcagctcaaagatctcaaagctgaactttctttgctccgagttgctaaggtcac 52226990  T
Q  258 tgggggtgcacccaacaatctctccaaaat 287  Q
    ||| |||||||||||||| |||||||||||    
T  52226991 tggtggtgcacccaacaagctctccaaaat 52227020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 52227166 - 52227262
Alignment:
Q  288 taaggaggtaaggttgtcgattgctcaggttttgacagtgatttcccagaagcggaaagctgcattgagggaagtttacaagaacaagaagtatttg 384  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||||||||||    
T  52227166 taaggtggtgaggttgtcgattgctcaggtgttgacagtgatttctcagaagcagaaggctgctttgagggaagtatacaagaacaagaagtatttg 52227262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 47805425 - 47805525
Alignment:
Q  184 accaaagctgatctattggctcagctcaaagacctcaaagctgaactagctttgctccatgttgctaaggccactgggggtgcacccaacaatctctcca 283  Q
    |||||| ||||||| |||||||| |||||||||||||| ||||||||   ||||||   ||||||||||| |||||| |||||||||||||| |||||||    
T  47805425 accaaatctgatctgttggctcaactcaaagacctcaaggctgaactcattttgctatgtgttgctaaggtcactggtggtgcacccaacaagctctcca 47805524  T
Q  284 a 284  Q
    |    
T  47805525 a 47805525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 47805654 - 47805711
Alignment:
Q  327 gatttcccagaagcggaaagctgcattgagggaagtttacaagaacaagaagtatttg 384  Q
    |||||| ||||||| ||| |||||||||||||||| ||||||||||| ||||||||||    
T  47805654 gatttctcagaagcagaaggctgcattgagggaagcttacaagaacaggaagtatttg 47805711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 1581 - 1645
Alignment:
Q  31 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttag 95  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  1581 tatgtgatgcatgaaatgtatgtttagttagcgcatgtatgagatgtatgcttaacatgttttag 1645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 4071 - 4007
Alignment:
Q  31 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttag 95  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  4071 tatgtgatgcatgaaatgtatgtttagttagcgcatgtatgagatgtatgcttaacatgttttag 4007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 19986741 - 19986665
Alignment:
Q  184 accaaagctgatctattggctcagctcaaagacctcaaagctgaactagctttgctccatgttgctaaggccactgg 260  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||  ||||||||||| ||||||    
T  19986741 accaaagctgatctgttggctcagctcaaagacctcaaggctgaactcgctttgctctgtgttgctaaggtcactgg 19986665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 16800345 - 16800299
Alignment:
Q  31 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgt 77  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  16800345 tatgtgatgcatgaaatgtatgtttagctaacacatgtataagatgt 16800299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 19985750 - 19985712
Alignment:
Q  346 gctgcattgagggaagtttacaagaacaagaagtatttg 384  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  19985750 gctgcattgagggaagtttacaagaaaaagaagtatttg 19985712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 17194658 - 17194594
Alignment:
Q  31 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttag 95  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  17194658 tatgtgatgcatgaaatgtatgtttagttagcgcatgtatgagatgtatgcttaacttgttttag 17194594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 15604911 - 15604846
Alignment:
Q  31 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatg-tttaacatgttttag 95  Q
    |||||||||||||||||||||| ||| ||| |||||||||  |||||||| || ||||||||||||    
T  15604911 tatgtgatgcatgaaatgtatgattatttagcgcatgtatatgatgtatgcttaaacatgttttag 15604846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 24638833 - 24638897
Alignment:
Q  31 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttag 95  Q
    ||||||||||||| |||||||||||||||| | |||| |||||||||||| ||||||||||||||    
T  24638833 tatgtgatgcatgtaatgtatgtttagttagcacatgcatgagatgtatgcttaacatgttttag 24638897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University