View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_55 (Length: 380)
Name: NF19878_high_55
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 48014328 - 48013967
Alignment:
| Q |
1 |
tcaggatttgtcgtaacactcaacaagtgacaacaaatgtatttacaaattgctcactatagaagtcattatcctgactattgtagttggatgcacagtc |
100 |
Q |
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| T |
48014328 |
tcaggatttgtcttaacactcaacaagtgacaacaaatgtatttacaaatttctcactatagaagtcattatcctgattattgtagttgaatgcacagtc |
48014229 |
T |
|
| Q |
101 |
ttacgagacacaagtaaatttcttttcaatgaaatcaaccatcattgacacttctattgagccactaaaattctaaag-nnnnnnnnnttatgctctaca |
199 |
Q |
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|||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
48014228 |
ttacaagacacgagtaaatttcttatcaatgaaatcaaccatcattgacacttctattgagccactaaaattccaaagaaaaaaaaaattatgctctaca |
48014129 |
T |
|
| Q |
200 |
tttttcttcaagatcacattaaatcttaattattannnnnnnaactcaacgcgttataaaatcatctgtgtatgtttgcttagcgttgtgtttatcaatt |
299 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48014128 |
tttttcttcaagatcacattaaatcttaattattatttttttaactcaacgcgttataaaatcatctgtgtatgtttgcttagcgttgtgtttatcaatt |
48014029 |
T |
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| Q |
300 |
ccgccgtaagaaaccatgaaaattgtgatgaactaacttatttgctattagataatttatccttat |
365 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48014028 |
ccgccgtaagaaaccatgaaaattgtgatgaacta----atttgctattagataatttatccttat |
48013967 |
T |
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