View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_high_58 (Length: 374)

Name: NF19878_high_58
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19878_high_58
NF19878_high_58
[»] chr6 (2 HSPs)
chr6 (15-358)||(32862729-32863072)
chr6 (284-316)||(34406443-34406475)
[»] chr4 (1 HSPs)
chr4 (285-338)||(32754626-32754679)
[»] chr1 (2 HSPs)
chr1 (284-337)||(16567307-16567360)
chr1 (284-337)||(303694-303747)
[»] chr5 (2 HSPs)
chr5 (286-325)||(11071071-11071110)
chr5 (285-329)||(14332161-14332205)
[»] chr8 (2 HSPs)
chr8 (284-328)||(16330994-16331038)
chr8 (284-320)||(30585111-30585147)
[»] chr7 (1 HSPs)
chr7 (284-324)||(36641381-36641420)


Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 32863072 - 32862729
Alignment:
Q  15 tgaagcaatggtctaaaacctttatttgttccagcattgtttatctgttgagtagtttgaataaaaatacaatacgaaaaattagattaggaccaaaaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32863072 tgaagcaatggtctaaaacctttatttgttccagcattgtttatctgttgagtagtttgaataaaaatacaatacgaaaaattagattaggaccaaaaag 32862973  T
Q  115 cagaaaccacactcagcaagaaataaggaatccaatataaaactttcattgaagtgataacaaaatcgatagtagggttcattagctcaatgatgctcaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32862972 cagaaaccacactcagcaagaaataaggaatccaatataaaactttcattgaagtgataacaaaatcgatagtagggttcattagctcaatgatgctcaa 32862873  T
Q  215 cctatgaaacactgacacagacaccgagcaagatactaatactgacacgctgacacttgtaaaaatattatttaagaaaatgaaagtgatcgaatgtaac 314  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32862872 tctatgaaacactgacacagacaccgagcaagatactaatactgacacgctgacacttgtaaaaatattatttaagaaaatgaaagtgattgaatgtaac 32862773  T
Q  315 cacgtgtgtcagtatcttgttggcgtctaatgccgacacgtgtc 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32862772 cacgtgtgtcagtatcttgttggcgtctaatgccgacacgtgtc 32862729  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 34406443 - 34406475
Alignment:
Q  284 atttaagaaaatgaaagtgatcgaatgtaacca 316  Q
    ||||||||||||||||||||| |||||||||||    
T  34406443 atttaagaaaatgaaagtgattgaatgtaacca 34406475  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 32754626 - 32754679
Alignment:
Q  285 tttaagaaaatgaaagtgatcgaatgtaaccacgtgtgtcagtatcttgttggc 338  Q
    |||||||||||||||||||| ||||||||||||   |||||||||| |||||||    
T  32754626 tttaagaaaatgaaagtgattgaatgtaaccacacatgtcagtatcatgttggc 32754679  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 16567307 - 16567360
Alignment:
Q  284 atttaagaaaatgaaagtgatcgaatgtaaccacgtgtgtcagtatcttgttgg 337  Q
    ||||||||||||| || |||| |||||||||||| |||||||||||| ||||||    
T  16567307 atttaagaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttgg 16567360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 303694 - 303747
Alignment:
Q  284 atttaagaaaatgaaagtgatcgaatgtaaccacgtgtgtcagtatcttgttgg 337  Q
    |||| ||||||||||||| || ||||||||||||  ||||||||||| ||||||    
T  303694 atttgagaaaatgaaagtaattgaatgtaaccacaagtgtcagtatcgtgttgg 303747  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 11071071 - 11071110
Alignment:
Q  286 ttaagaaaatgaaagtgatcgaatgtaaccacgtgtgtca 325  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  11071071 ttaagaaaataaaagtgatcgaatgtaaccacatgtgtca 11071110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 14332205 - 14332161
Alignment:
Q  285 tttaagaaaatgaaagtgatcgaatgtaaccacgtgtgtcagtat 329  Q
    ||||||||||| |||||||| |||||||||||| ||||| |||||    
T  14332205 tttaagaaaataaaagtgattgaatgtaaccacatgtgtgagtat 14332161  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 16330994 - 16331038
Alignment:
Q  284 atttaagaaaatgaaagtgatcgaatgtaaccacgtgtgtcagta 328  Q
    |||||||||||||||| ||||  ||||||||||| ||||||||||    
T  16330994 atttaagaaaatgaaaatgattaaatgtaaccacatgtgtcagta 16331038  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 30585147 - 30585111
Alignment:
Q  284 atttaagaaaatgaaagtgatcgaatgtaaccacgtg 320  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  30585147 atttaagaaaatgaaagtgattgaatgtaaacacgtg 30585111  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 36641381 - 36641420
Alignment:
Q  284 atttaagaaaatgaaagtgatcgaatgtaaccacgtgtgtc 324  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  36641381 atttaagaaaatgaaa-taatcgaatgtaaccacgtgtgtc 36641420  T

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