View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_7 (Length: 620)
Name: NF19878_high_7
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 601
Target Start/End: Complemental strand, 50465724 - 50465142
Alignment:
| Q |
18 |
atcacagaatgtaatgcattatgcatgtacataaaagaatggatatgcaactgtgtattacta-------attctttttagccattcacaaacaagtcaa |
110 |
Q |
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| T |
50465724 |
atcacagaatgtaatgcattatgcatgtacataaaagaatggatatgcaactgtgtattactacttactaattctttttagccattcacaaacaagtcaa |
50465625 |
T |
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| Q |
111 |
ctagcacgatcaagtactaactctatacaacattttcaattgtaatcttgattttcttaccccattttctcctctctgttttgctacatcaaatctatta |
210 |
Q |
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| T |
50465624 |
ctagcacgatcaagtactaactctatacaacattttcaattgtaatcttgattttcttaccccattttctcctctctattttgctacatcaaatctatta |
50465525 |
T |
|
| Q |
211 |
nnnnnnnncttcttatatcactttctttcctttattctaagtgtatatttcatattgcgtgagacggtttttacattgtcacaactaatcatacatgtga |
310 |
Q |
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| T |
50465524 |
tttttt--cttcttatatcactttctttcctttatt------gtatatctcatattgcgtgagacggtttttacattatcacaactaatcatacacgtga |
50465433 |
T |
|
| Q |
311 |
cttttagaagtaattatgattaaagttaaatgtgattaatgatttaatgggttaattaaccgtnnnnnnnnnntctttacatataaattattgggtgaaa |
410 |
Q |
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| T |
50465432 |
tttttagaagtaattaatattaaagttaaatgtgattaatgatttaacgggttaattaaccgtaaaaaaaaaatctttacatataaattattgggtgaaa |
50465333 |
T |
|
| Q |
411 |
agcagaaatatcatatggtatctctccctctatccaaatgacgggttatttattgaatgtgacagggatatatagtatatgaggtaaaaacaataaaaag |
510 |
Q |
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| T |
50465332 |
agcagaaatatcatatggtatctctccctctatccaaatgacgggttatttattgaatgtgacagggatatatagtatatgaggtaaaaacaataaaaag |
50465233 |
T |
|
| Q |
511 |
aagttcttaataaatacagagcctagnnnnnnnagatctcaaaaccatccttttctaataaatagatacagtatgcgtgatgcaaccgttc |
601 |
Q |
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| T |
50465232 |
aagttcctaataaatacagagcctagtttttttagatctcaaaaccatccttttctaataaatagatacagtatgcgtgatgcaaccgttc |
50465142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 26491837 - 26491773
Alignment:
| Q |
297 |
aatcatacatgtgacttttagaagtaattatgattaaagttaaatgtgattaatgatttaatgggtt |
363 |
Q |
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| T |
26491837 |
aatcatacatgtga--ttgagaagtgattatgataaaatttaaatgtgattaataatttaaagggtt |
26491773 |
T |
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