View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_71 (Length: 344)
Name: NF19878_high_71
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_71 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 89 - 340
Target Start/End: Complemental strand, 41785983 - 41785732
Alignment:
| Q |
89 |
aagctggctcactgcatttgtcaagttcaatttctctcctccttctttgctcactgtggcttctaaattccatactttgtctcttaacaacaattcctgc |
188 |
Q |
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| T |
41785983 |
aagctggctcactgcatttgtcaagttcaatttctctcctccttctttgctcactgtggcttctaaattccatactttgtctcttaacaacaattcctgc |
41785884 |
T |
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| Q |
189 |
tcttctttttcgctcagtagcgttgtaagacaatccacattttccttcaattgtttcatttcgacgttcattttctttatccaatccttcgcaaactgaa |
288 |
Q |
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| T |
41785883 |
tcttctttttcgctcagtagcgttgtaagacaatccacattttccttcaattgtttcatttcgacgttcattttctttatccaatccttcgcaaactgaa |
41785784 |
T |
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| Q |
289 |
cctcacaaagcattttagacacattgctcatgacacactctctgtgctcctc |
340 |
Q |
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| T |
41785783 |
cctcacaaagcattttagacacattgctcatgacacactctctgtgttcctc |
41785732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 10835178 - 10835111
Alignment:
| Q |
255 |
ttcattttctttatccaatccttcgcaaactgaacctcacaaagcattttagacacattgctcatgacacac |
326 |
Q |
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| T |
10835178 |
ttcattttctttatcctatccttagcaaaccgaacctc----agaattttagaaacactgctcatgacacac |
10835111 |
T |
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