View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_high_80 (Length: 317)

Name: NF19878_high_80
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19878_high_80
NF19878_high_80
[»] chr2 (28 HSPs)
chr2 (1-299)||(40693936-40694236)
chr2 (1-44)||(16261215-16261258)
chr2 (1-42)||(4104504-4104545)
chr2 (1-46)||(16736097-16736142)
chr2 (1-42)||(20908856-20908897)
chr2 (1-46)||(37744445-37744490)
chr2 (1-41)||(36442479-36442519)
chr2 (1-44)||(20908509-20908552)
chr2 (1-44)||(31450664-31450707)
chr2 (1-40)||(43183585-43183624)
chr2 (1-43)||(13354522-13354564)
chr2 (1-39)||(16655951-16655989)
chr2 (1-43)||(17856534-17856576)
chr2 (1-43)||(25642613-25642655)
chr2 (1-39)||(27132514-27132552)
chr2 (1-39)||(39912630-39912668)
chr2 (1-42)||(4104159-4104200)
chr2 (1-42)||(4120764-4120805)
chr2 (1-46)||(13354173-13354218)
chr2 (1-38)||(16655610-16655647)
chr2 (1-42)||(36211744-36211785)
chr2 (1-42)||(41377699-41377740)
chr2 (9-42)||(41659745-41659778)
chr2 (1-45)||(5961666-5961710)
chr2 (1-41)||(12303786-12303826)
chr2 (1-45)||(28203205-28203249)
chr2 (3-39)||(34820626-34820662)
chr2 (1-41)||(38275802-38275842)
[»] chr4 (28 HSPs)
chr4 (1-52)||(9010850-9010901)
chr4 (1-44)||(48209946-48209989)
chr4 (1-43)||(38866397-38866439)
chr4 (1-43)||(52914951-52914993)
chr4 (1-42)||(32384653-32384694)
chr4 (1-42)||(34958832-34958873)
chr4 (1-42)||(46535523-46535564)
chr4 (1-41)||(11242809-11242849)
chr4 (1-45)||(21217844-21217888)
chr4 (1-40)||(29864520-29864559)
chr4 (1-44)||(37515798-37515841)
chr4 (5-44)||(40067346-40067385)
chr4 (1-44)||(45911919-45911962)
chr4 (1-44)||(46200482-46200525)
chr4 (1-44)||(54136089-54136132)
chr4 (1-39)||(1157551-1157589)
chr4 (1-42)||(10014465-10014506)
chr4 (1-42)||(10017815-10017856)
chr4 (1-42)||(10021606-10021647)
chr4 (1-42)||(18862786-18862827)
chr4 (1-42)||(25593436-25593477)
chr4 (1-42)||(27347597-27347638)
chr4 (1-42)||(33626209-33626250)
chr4 (1-42)||(40067693-40067734)
chr4 (1-42)||(44710403-44710444)
chr4 (1-45)||(29864173-29864217)
chr4 (9-53)||(44169968-44170012)
chr4 (1-41)||(46535867-46535907)
[»] chr8 (21 HSPs)
chr8 (1-49)||(3869294-3869342)
chr8 (1-53)||(11639380-11639432)
chr8 (1-43)||(29027313-29027355)
chr8 (1-42)||(31230958-31230999)
chr8 (7-43)||(21512412-21512448)
chr8 (1-44)||(8653934-8653977)
chr8 (4-43)||(11639051-11639090)
chr8 (1-44)||(24456732-24456775)
chr8 (1-44)||(31230611-31230654)
chr8 (1-44)||(39912264-39912307)
chr8 (1-39)||(1826136-1826174)
chr8 (1-39)||(1860581-1860619)
chr8 (1-43)||(5416811-5416853)
chr8 (1-43)||(24456997-24457039)
chr8 (1-43)||(30872782-30872824)
chr8 (1-39)||(37393480-37393518)
chr8 (1-43)||(44678316-44678358)
chr8 (1-50)||(18017782-18017831)
chr8 (1-42)||(40040162-40040203)
chr8 (9-53)||(12873399-12873443)
chr8 (1-41)||(39240031-39240071)
[»] chr5 (19 HSPs)
chr5 (1-48)||(10656088-10656135)
chr5 (1-39)||(15476269-15476307)
chr5 (1-46)||(3878477-3878522)
chr5 (1-42)||(42710695-42710736)
chr5 (1-44)||(14143510-14143552)
chr5 (1-44)||(15670496-15670539)
chr5 (1-44)||(29023935-29023978)
chr5 (1-47)||(5087802-5087848)
chr5 (1-43)||(5088473-5088515)
chr5 (1-43)||(7399076-7399118)
chr5 (1-43)||(19204943-19204985)
chr5 (1-43)||(26288990-26289032)
chr5 (1-43)||(35263493-35263535)
chr5 (5-42)||(17861039-17861076)
chr5 (1-42)||(28392115-28392156)
chr5 (8-44)||(5460186-5460222)
chr5 (1-41)||(8418529-8418569)
chr5 (1-45)||(38416479-38416523)
chr5 (1-41)||(40774339-40774379)
[»] chr6 (15 HSPs)
chr6 (1-46)||(25551343-25551388)
chr6 (1-42)||(9173901-9173942)
chr6 (1-50)||(13155831-13155880)
chr6 (1-50)||(13160687-13160736)
chr6 (1-48)||(11525110-11525157)
chr6 (1-44)||(33548202-33548245)
chr6 (1-43)||(3338476-3338518)
chr6 (1-43)||(3338820-3338862)
chr6 (1-39)||(13156179-13156217)
chr6 (1-39)||(13161035-13161073)
chr6 (1-43)||(33545167-33545209)
chr6 (2-44)||(35132936-35132978)
chr6 (1-42)||(24605218-24605259)
chr6 (9-42)||(32283026-32283059)
chr6 (1-41)||(11524706-11524746)
[»] chr3 (29 HSPs)
chr3 (1-50)||(28688335-28688384)
chr3 (1-50)||(44069468-44069517)
chr3 (1-48)||(34629976-34630023)
chr3 (1-44)||(41997817-41997860)
chr3 (1-44)||(54081629-54081672)
chr3 (1-43)||(9028190-9028232)
chr3 (1-43)||(41998159-41998201)
chr3 (1-53)||(35580294-35580346)
chr3 (1-53)||(45871686-45871738)
chr3 (1-44)||(14353392-14353435)
chr3 (1-48)||(40410706-40410753)
chr3 (1-39)||(2829410-2829448)
chr3 (1-43)||(4846941-4846983)
chr3 (1-43)||(12123089-12123131)
chr3 (1-43)||(15862520-15862562)
chr3 (1-43)||(31514207-31514249)
chr3 (1-43)||(41208745-41208787)
chr3 (1-43)||(45171067-45171109)
chr3 (1-42)||(8846076-8846117)
chr3 (1-42)||(8846421-8846462)
chr3 (1-38)||(22354946-22354983)
chr3 (1-42)||(27940272-27940313)
chr3 (1-46)||(33812720-33812765)
chr3 (1-42)||(44069123-44069164)
chr3 (1-38)||(49222040-49222077)
chr3 (1-42)||(54107669-54107710)
chr3 (1-49)||(7274646-7274694)
chr3 (1-41)||(19124517-19124556)
chr3 (1-41)||(45171412-45171452)
[»] chr1 (25 HSPs)
chr1 (1-42)||(24590570-24590611)
chr1 (1-44)||(50921436-50921479)
chr1 (1-39)||(25088360-25088398)
chr1 (1-39)||(29256835-29256873)
chr1 (1-42)||(22584697-22584738)
chr1 (1-54)||(28970407-28970460)
chr1 (9-49)||(27209162-27209202)
chr1 (1-45)||(52412595-52412639)
chr1 (1-44)||(34279586-34279629)
chr1 (1-44)||(52412943-52412986)
chr1 (1-43)||(9881551-9881593)
chr1 (1-39)||(10923365-10923403)
chr1 (1-43)||(14118529-14118571)
chr1 (1-43)||(16268034-16268076)
chr1 (1-43)||(23281355-23281397)
chr1 (1-43)||(25088015-25088057)
chr1 (1-43)||(28112720-28112762)
chr1 (1-43)||(33753224-33753266)
chr1 (1-43)||(34028720-34028762)
chr1 (1-43)||(34029066-34029108)
chr1 (1-43)||(45305754-45305796)
chr1 (1-39)||(50118350-50118388)
chr1 (1-54)||(2125547-2125600)
chr1 (1-42)||(51691874-51691915)
chr1 (1-41)||(50921061-50921101)
[»] chr7 (15 HSPs)
chr7 (1-43)||(10625105-10625147)
chr7 (1-51)||(10625429-10625479)
chr7 (1-43)||(23472592-23472634)
chr7 (1-53)||(18731008-18731060)
chr7 (1-41)||(48704153-48704193)
chr7 (1-44)||(31715966-31716009)
chr7 (1-44)||(47250891-47250934)
chr7 (1-44)||(47251241-47251284)
chr7 (1-43)||(9034660-9034702)
chr7 (1-43)||(31715632-31715674)
chr7 (1-43)||(32706731-32706773)
chr7 (1-43)||(35085738-35085780)
chr7 (1-39)||(39118013-39118051)
chr7 (1-42)||(11679047-11679088)
chr7 (1-45)||(8769627-8769671)
[»] scaffold0809 (1 HSPs)
scaffold0809 (1-48)||(4663-4710)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-42)||(11832-11873)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-42)||(40697-40738)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 40694236 - 40693936
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattatatttact--atgtaggaattaattaaattaagaaattaatttgaagtatg 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| |||||||||||||||    
T  40694236 atactacctaaatagttaagggaccaaaaatataatttagccttaattatatttactgtatctaggaattaattaaattaagaagttaatttgaagtatg 40694137  T
Q  99 gacattgttccaagtggtttgcatacgaggatcaatgaaaattgaagcttgcttgggaattgaaaatgcaaaatcacggagtacatattgtgtcagtttc 198  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40694136 gacattgttccaagtggtttgcatatgaggatcaatgaaaattgaagcttgcttgggaattgaaaatgcaaaatcacggagtacatattgtgtcagtttc 40694037  T
Q  199 atatttgtcaaggtttggctttagcatgcactgaatcactcactcactagcacaagcactcatggctgtggatgtactcttgcatcatattggtaagtca 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40694036 atatttgtcaaggtttggctttagcatgcactgaatcactcactcactagcacaagcactcatggctgtggatgtactcttgcatcatattggtaagtca 40693937  T
Q  299 t 299  Q
    |    
T  40693936 t 40693936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16261215 - 16261258
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  16261215 atactacctaaatagttaagggaccaaaaatacaatttagcctt 16261258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4104504 - 4104545
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  4104504 atactacctaaatagttaagggaccaaaaatacaatttagcc 4104545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16736142 - 16736097
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaa 46  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||    
T  16736142 atactacctaaatagttaagggaccaaaaatgcaatttagccttaa 16736097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20908856 - 20908897
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  20908856 atactacctaaatagttaagggaccaaaaatacaatttagcc 20908897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37744490 - 37744445
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaa 46  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||    
T  37744490 atactacctaaatagttaagggaccaaaaatgtaatttagtcttaa 37744445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36442479 - 36442519
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  36442479 atactatctaaatagttaagggaccaaaaatataatttagc 36442519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20908552 - 20908509
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||    
T  20908552 atactacctaaataattaagggaccaaaaatacaatttagcctt 20908509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31450707 - 31450664
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  31450707 atactacctaaatagttaagggaccaaaaatgcaatttagcctt 31450664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43183624 - 43183585
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttag 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  43183624 atactacctaaatagttaagggactaaaaatgtaatttag 43183585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13354522 - 13354564
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| |||| || ||||||||||    
T  13354522 atactacctaaatagttaagggaccaaaattacaatttagcct 13354564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16655951 - 16655989
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  16655951 atactacctaaatagttaagggaccaaaaatacaattta 16655989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17856534 - 17856576
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  17856534 atactacctaaatagttaagggaccaaaaatgcaatttagcct 17856576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25642613 - 25642655
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||  ||||||| ||||||||||    
T  25642613 atactacctaaatagttaagggaacaaaaatacaatttagcct 25642655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27132552 - 27132514
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  27132552 atactacctaaatagttaagggaccaaaaatacaattta 27132514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39912668 - 39912630
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  39912668 atactacctaaatagttaagggaccaaaaatacaattta 39912630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4104200 - 4104159
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  4104200 atactacctaaatagttaagggaccaaaaatgcaatttagcc 4104159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4120805 - 4120764
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  4120805 atactacctaaatagttaagggacaaaaaatgcaatttagcc 4120764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13354218 - 13354173
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaa 46  Q
    ||||||||||||||||||||||||  |||||  |||||||||||||    
T  13354218 atactacctaaatagttaagggaccgaaaattcaatttagccttaa 13354173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16655647 - 16655610
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattt 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  16655647 atactacctaaatagttaagggaccaaaaatacaattt 16655610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36211744 - 36211785
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||| ||| ||||||| |||||||||    
T  36211744 atactacctaaatagttaagagaccaaaaatacaatttagcc 36211785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41377699 - 41377740
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  41377699 atactacctaaatagttaagggaccaaaaatgcaatttagcc 41377740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 41659778 - 41659745
Alignment:
Q  9 taaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||| |||||||||||||||||    
T  41659778 taaatagttaagggacaaaaaatataatttagcc 41659745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5961710 - 5961666
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctta 45  Q
    |||||||||||||||||||||| | ||||||  ||||||||||||    
T  5961710 atactacctaaatagttaaggggccaaaaatgcaatttagcctta 5961666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12303826 - 12303786
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  12303826 atactacctaaatagttaagggaccaaaaatgcaatttagc 12303786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28203205 - 28203249
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctta 45  Q
    |||| ||||||||||||||||||| ||||||  ||||||||||||    
T  28203205 atacgacctaaatagttaagggaccaaaaatgcaatttagcctta 28203249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 34820626 - 34820662
Alignment:
Q  3 actacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  34820626 actacctaaatagttaagggaccaaaaatacaattta 34820662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38275802 - 38275842
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  38275802 atactacctaaatagttaagggacaaaaaatgcaatttagc 38275842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9010850 - 9010901
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattatat 52  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  9010850 atactacctaaatagttaagggaccaaaaatataatttagccttatttatat 9010901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 48209989 - 48209946
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  48209989 atactacctaaatagttaagggaccaaaaatgtaatttagcctt 48209946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38866439 - 38866397
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  38866439 atactacctaaatagttaagggaccaaaaatacaatttagcct 38866397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 52914993 - 52914951
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  52914993 atactacctaaatagttaagggaccaaaaatacaatttagcct 52914951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32384694 - 32384653
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  32384694 atactacctaaatagttaagggaccaaaaatacaatttagcc 32384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34958873 - 34958832
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  34958873 atactacctaaatagttaagggaccaaaaatacaatttagcc 34958832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46535564 - 46535523
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  46535564 atactacctaaatagttaagggaccaaaaatacaatttagcc 46535523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11242809 - 11242849
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  11242809 atactacctaaatagttaagggaccaaaaatgtaatttagc 11242849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21217888 - 21217844
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctta 45  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||    
T  21217888 atactacctaaatagttaagggaccaaaaatgcaatttagcctta 21217844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29864520 - 29864559
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttag 40  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  29864520 atactacctaaatagttaagggaccaaaaatacaatttag 29864559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37515798 - 37515841
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||    
T  37515798 atactacctaaatagttaagggactaaaaataaaatttaacctt 37515841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 40067385 - 40067346
Alignment:
Q  5 tacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  40067385 tacctaaatagttaagggacaaaaaatacaatttagcctt 40067346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45911919 - 45911962
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||    
T  45911919 atactacctaaatagttaggggaccaaaaatacaatttagcctt 45911962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46200525 - 46200482
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  46200525 atactacctaaatagttaagggaccaaaaatgcaatttagcctt 46200482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 54136132 - 54136089
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  54136132 atactacctaaatagttaagggaccaaaaatgcaatttagcctt 54136089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1157551 - 1157589
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  1157551 atactacctaaatagttaagggactaaaaatacaattta 1157589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10014506 - 10014465
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  10014506 atactacctaaatagttaagggaccaaaaatgcaatttagcc 10014465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10017856 - 10017815
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  10017856 atactacctaaatagttaagggaccaaaaatgcaatttagcc 10017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10021647 - 10021606
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  10021647 atactacctaaatagttaagggaccaaaaatgcaatttagcc 10021606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18862786 - 18862827
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  18862786 atactacctaaatagttaagggaccaaaaatgcaatttagcc 18862827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25593436 - 25593477
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    ||||| |||||||||||||||||| ||||||| |||||||||    
T  25593436 atactccctaaatagttaagggacaaaaaatacaatttagcc 25593477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27347638 - 27347597
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||| ||||||||| ||||||| |||||||||||||||||    
T  27347638 atactatctaaatagtcaagggaccaaaaatataatttagcc 27347597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33626209 - 33626250
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  33626209 atactacctaaatagttaagggaccaaaaatgaaatttagcc 33626250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40067693 - 40067734
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||  ||||||| |||||||||    
T  40067693 atactacctaaatagttaagggatcaaaaatacaatttagcc 40067734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44710444 - 44710403
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  44710444 atactacctaaatagttaagggaccaaaaatgcaatttagcc 44710403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29864217 - 29864173
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctta 45  Q
    |||||||||||||||||||||||  ||||||  ||||||||||||    
T  29864217 atactacctaaatagttaagggataaaaaatgcaatttagcctta 29864173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 44170012 - 44169968
Alignment:
Q  9 taaatagttaagggacgaaaaatataatttagccttaattatatt 53  Q
    |||||||||||||||| ||||||| ||||||||||| ||| ||||    
T  44170012 taaatagttaagggaccaaaaatacaatttagcctttattttatt 44169968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46535867 - 46535907
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||||||||||||||||| ||| ||||||| ||||||||    
T  46535867 atactacctaaatagttaagtgaccaaaaatacaatttagc 46535907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3869294 - 3869342
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaatta 49  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  3869294 atactacctaaatagttaagggaccaaaaatacaatttagccttaatta 3869342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11639380 - 11639432
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattatatt 53  Q
    |||||||||||||||||||||||||||||||  ||||||||||| | ||||||    
T  11639380 atactacctaaatagttaagggacgaaaaatgcaatttagcctttaatatatt 11639432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29027313 - 29027355
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  29027313 atactacctaaatagttaagagaccaaaaatataatttagcct 29027355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31230958 - 31230999
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  31230958 atactacctaaatagttaagggaccaaaaatgtaatttagcc 31230999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 21512448 - 21512412
Alignment:
Q  7 cctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||||| ||||||||||    
T  21512448 cctaaatagttaagggacgaaaaatacaatttagcct 21512412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8653977 - 8653934
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||    
T  8653977 atactacctaaatagttaggggaccaaaaatacaatttagcctt 8653934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 11639090 - 11639051
Alignment:
Q  4 ctacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  11639090 ctacctaaatagttaagggacaaaaaatacaatttagcct 11639051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24456775 - 24456732
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  24456775 atactacctaaatagttaagggaccaaaaatgcaatttagcctt 24456732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31230654 - 31230611
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| |||||| || |||||||||    
T  31230654 atactacctaaatagttaagggaccaaaaatgtagtttagcctt 31230611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 39912264 - 39912307
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||    
T  39912264 atactacctaaatagttaagggaccaaaaatgtaatttaacctt 39912307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1826136 - 1826174
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  1826136 atactacctaaatagttaagggaccaaaaatacaattta 1826174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1860581 - 1860619
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  1860581 atactacctaaatagttaagggaccaaaaatacaattta 1860619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5416853 - 5416811
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||    
T  5416853 atactacctaaatagttaggggaccaaaaatacaatttagcct 5416811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24456997 - 24457039
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  24456997 atactacctaaatagttaagggaccaaaaatgcaatttagcct 24457039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30872824 - 30872782
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  30872824 atactacctaaatagttaagggaccaaaaatgcaatttagcct 30872782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37393518 - 37393480
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  37393518 atactacctaaatagttaagggaccaaaaatacaattta 37393480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44678358 - 44678316
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  44678358 atactacctaaatagttaagggaccaaaaatgcaatttagcct 44678316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 18017831 - 18017782
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattat 50  Q
    |||||||||||||||||||||||| ||| ||  |||||||||| ||||||    
T  18017831 atactacctaaatagttaagggaccaaatatgcaatttagcctaaattat 18017782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40040203 - 40040162
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  40040203 atactacctaaatagttaagggaccaaaaatgcaatttagcc 40040162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 12873399 - 12873443
Alignment:
Q  9 taaatagttaagggacgaaaaatataatttagccttaattatatt 53  Q
    |||||||||||||||| ||||||| |||||||||| || ||||||    
T  12873399 taaatagttaagggaccaaaaatacaatttagcctaaaatatatt 12873443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39240071 - 39240031
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  39240071 atactacctaaatagttaagggaccaaaaatgcaatttagc 39240031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10656135 - 10656088
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaatt 48  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  10656135 atactacctaaatagttaagggaccaaaaatacaatttagccttaatt 10656088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15476307 - 15476269
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  15476307 atactacctaaatagttaagggaccaaaaatataattta 15476269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3878522 - 3878477
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaa 46  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||||    
T  3878522 atactacctaaataattaagggaccaaaaatacaatttagccttaa 3878477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42710695 - 42710736
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  42710695 atactacctaaatagttaagggaccaaaaatacaatttagcc 42710736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14143552 - 14143510
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  14143552 atactatctaaatagttaagggac-aaaaatataatttagcctt 14143510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15670496 - 15670539
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||    
T  15670496 atactacctaaatagttaagggaccaaaaatacaatttaacctt 15670539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29023978 - 29023935
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  29023978 atactacctaaatagttaagggaccaaaaatgcaatttagcctt 29023935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5087848 - 5087802
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaat 47  Q
    |||||||||||||||||||||||| ||||||  ||||| ||||||||    
T  5087848 atactacctaaatagttaagggaccaaaaattcaatttcgccttaat 5087802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5088473 - 5088515
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  5088473 atactacctaaatagttaagagaccaaaaatacaatttagcct 5088515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7399118 - 7399076
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  7399118 atactacctaaatagttaagggaccaaaaatgcaatttagcct 7399076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19204985 - 19204943
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  19204985 atactacctaaatagttaagggaccaaaaatgcaatttagcct 19204943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26289032 - 26288990
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||    
T  26289032 atacaacctaaatagttaagggaccaaaaatacaatttagcct 26288990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35263535 - 35263493
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  35263535 atactacctaaatagttaagggaccaaaaatgcaatttagcct 35263493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 17861076 - 17861039
Alignment:
Q  5 tacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  17861076 tacctaaatagttaaaggaccaaaaatataatttagcc 17861039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28392115 - 28392156
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||| ||| ||||||| |||||||||    
T  28392115 atactacctaaatagttaagagaccaaaaatagaatttagcc 28392156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 5460222 - 5460186
Alignment:
Q  8 ctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  5460222 ctaaatagttaagggaccaaaaatacaatttagcctt 5460186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8418529 - 8418569
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  8418529 atactacctaaatagttaagggaccaaaaatgcaatttagc 8418569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38416479 - 38416523
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctta 45  Q
    |||||||||||||| ||||| ||| ||||||| ||||||||||||    
T  38416479 atactacctaaataattaagagaccaaaaatacaatttagcctta 38416523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40774379 - 40774339
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  40774379 atactacctaaatagttaagggacaaaaaatgaaatttagc 40774339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25551388 - 25551343
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaa 46  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  25551388 atactacctaaatagttaagggaccaaaaatacaatttagccttaa 25551343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9173942 - 9173901
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  9173942 atactacctaaatagttaagggaccaaaaatacaatttagcc 9173901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13155880 - 13155831
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattat 50  Q
    |||||||||||||||||||| ||| |||||||||||||| |||| |||||    
T  13155880 atactacctaaatagttaagagaccaaaaatataatttatcctttattat 13155831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13160736 - 13160687
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattat 50  Q
    |||||||||||||||||||| ||| |||||||||||||| |||| |||||    
T  13160736 atactacctaaatagttaagagaccaaaaatataatttatcctttattat 13160687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11525110 - 11525157
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaatt 48  Q
    ||||||||||||| |||||||||| ||||||  |||||||||||||||    
T  11525110 atactacctaaattgttaagggaccaaaaatgcaatttagccttaatt 11525157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 33548202 - 33548245
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  33548202 atactacctaaatagttaagggactaaaaattcaatttagcctt 33548245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3338518 - 3338476
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  3338518 atactacctaaatagttaagggacaaaaaatgcaatttagcct 3338476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3338820 - 3338862
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||    
T  3338820 atactacttaaatagttaagggaccaaaaataaaatttagcct 3338862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13156179 - 13156217
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  13156179 atactacctaaatagttaagggacaaaaaatgtaattta 13156217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13161035 - 13161073
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  13161035 atactacctaaatagttaagggacaaaaaatgtaattta 13161073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33545167 - 33545209
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    ||||||||||||||||||| | || ||||||||||||||||||    
T  33545167 atactacctaaatagttaatgcaccaaaaatataatttagcct 33545209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 35132936 - 35132978
Alignment:
Q  2 tactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||  |||||| |||||||||||    
T  35132936 tactacctaaatagttaagggaccgaaaatacaatttagcctt 35132978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24605218 - 24605259
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| |||||| ||||| ||||    
T  24605218 atactacctaaatagttaagggaccaaaaatgtaattaagcc 24605259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 32283059 - 32283026
Alignment:
Q  9 taaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||| |||||||||||||||||    
T  32283059 taaatagttaagggaccaaaaatataatttagcc 32283026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11524746 - 11524706
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    ||||||||||||||||||| |||| ||||||| ||||||||    
T  11524746 atactacctaaatagttaaaggaccaaaaatacaatttagc 11524706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28688335 - 28688384
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattat 50  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  28688335 atactacctaaatagttaagggacaaaaaatgtaatttagccttagttat 28688384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44069468 - 44069517
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattat 50  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| |||||    
T  44069468 atactacctaaatagttaagggaccaaaaatacaatttagcctttattat 44069517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34630023 - 34629976
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaatt 48  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||||||    
T  34630023 atactacttaaatagttaagggaccaaaaatataatttaaccttaatt 34629976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41997860 - 41997817
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  41997860 atactacctaaatagttaagggaccaaaaatgtaatttagcctt 41997817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 54081629 - 54081672
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  54081629 atactacctaaatagttaagggaccaaaaatacaatttagcctt 54081672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9028232 - 9028190
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  9028232 atactacctaaatagttaagggaccaaaaatgtaatttagcct 9028190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41998159 - 41998201
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  41998159 atactacctaaatagttaagggaccaaaaatacaatttagcct 41998201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35580294 - 35580346
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattatatt 53  Q
    |||||||||||||||||||||||| ||||||  |||||| |||||||| ||||    
T  35580294 atactacctaaatagttaagggaccaaaaatgcaatttaaccttaattctatt 35580346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 45871738 - 45871686
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattatatt 53  Q
    |||||||||||||||||||||||| ||||||  |||||||||||  |||||||    
T  45871738 atactacctaaatagttaagggaccaaaaatgcaatttagccttttttatatt 45871686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14353392 - 14353435
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||    
T  14353392 atactacctaaatagttaagggaccaaaaatacaatttatcctt 14353435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40410753 - 40410706
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaatt 48  Q
    |||||||||||||||||||||||| ||||||  |||||| ||||||||    
T  40410753 atactacctaaatagttaagggaccaaaaatgcaatttaaccttaatt 40410706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2829448 - 2829410
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  2829448 atactacctaaatagttaagggaccaaaaatacaattta 2829410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4846941 - 4846983
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  4846941 atactacctaaatagttaagggaccaaaaatgcaatttagcct 4846983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12123131 - 12123089
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  12123131 atactacctaaatagttaagggaccaaaaatgcaatttagcct 12123089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15862520 - 15862562
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  15862520 atactacctaaatagttaagggacaaaaaatgcaatttagcct 15862562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31514207 - 31514249
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  31514207 atactacctaaatagttaagggactaaaaatgcaatttagcct 31514249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41208745 - 41208787
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  41208745 atactacctaaatagttaagggactaaaaatgcaatttagcct 41208787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45171109 - 45171067
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| | ||||| ||||||||||    
T  45171109 atactacctaaatagttaagggaccagaaatacaatttagcct 45171067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8846117 - 8846076
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  8846117 atactacctaaatagttaagggaccaaaaatgcaatttagcc 8846076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8846421 - 8846462
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  8846421 atactacctaaatagttaagggaccaaaaatgcaatttagcc 8846462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22354983 - 22354946
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattt 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  22354983 atactacctaaatagttaagggactaaaaatacaattt 22354946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27940313 - 27940272
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  27940313 atactacctaaatagttaagggaccaaaaatgaaatttagcc 27940272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33812765 - 33812720
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaa 46  Q
    |||||||||||||||||||||||| ||||||  |||||| ||||||    
T  33812765 atactacctaaatagttaagggaccaaaaatgaaatttaaccttaa 33812720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44069164 - 44069123
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  44069164 atactacctaaatagttaagggaccaaaaatgcaatttagcc 44069123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49222077 - 49222040
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattt 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  49222077 atactacctaaatagttaagggaccaaaaatacaattt 49222040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 54107710 - 54107669
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  54107710 atactacctaaatagttaagggaccaaaaatgcaatttagcc 54107669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7274694 - 7274646
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaatta 49  Q
    |||||||||||||| ||||||||| ||||||  ||||||||||| ||||    
T  7274694 atactacctaaatatttaagggaccaaaaatgcaatttagcctttatta 7274646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19124517 - 19124556
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  19124517 atactacctaaatagttaa-ggaccaaaaatataatttagc 19124556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45171412 - 45171452
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  45171412 atactacctaaatagttaagggactaaaaatgcaatttagc 45171452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24590570 - 24590611
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  24590570 atactacctaaatagttaagggaccaaaaatataatttagcc 24590611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50921436 - 50921479
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  50921436 atactacctaaatagttaagggaccaaaaatgtaatttagcctt 50921479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25088360 - 25088398
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  25088360 atactacctaaatagttaagggaccaaaaatataattta 25088398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29256873 - 29256835
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29256873 atactacctaaatagttaagggaccaaaaatataattta 29256835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22584697 - 22584738
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  22584697 atactacctaattagttaagggaccaaaaatataatttagcc 22584738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28970460 - 28970407
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattatattt 54  Q
    ||||||||||||||||||| |||| ||||||  |||||||||||| ||||||||    
T  28970460 atactacctaaatagttaaaggaccaaaaatgcaatttagccttatttatattt 28970407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 27209202 - 27209162
Alignment:
Q  9 taaatagttaagggacgaaaaatataatttagccttaatta 49  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  27209202 taaatagttaagggaccaaaaacataatttagccttaatta 27209162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52412639 - 52412595
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctta 45  Q
    |||||||||||||||||||||||| |||||| || ||||||||||    
T  52412639 atactacctaaatagttaagggaccaaaaatgtattttagcctta 52412595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34279586 - 34279629
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  34279586 atactacctaaatagttaagggaccaaaaatgcaatttagcctt 34279629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 52412943 - 52412986
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||    
T  52412943 ataccacctaaatagttaagggaccaaaaatgtaatttagcctt 52412986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9881593 - 9881551
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  9881593 atactacctaaatagttaagggaccaaaaatgcaatttagcct 9881551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10923403 - 10923365
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  10923403 atactacctaaataattaagggaccaaaaatataattta 10923365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14118571 - 14118529
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  14118571 atactacctaaatagttaagggaccaaaaatgcaatttagcct 14118529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16268034 - 16268076
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  16268034 atactacctaaatagttaagggaccaaaaatgcaatttagcct 16268076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23281355 - 23281397
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  23281355 atactacctaaatagttaagggaccaaaaatgcaatttagcct 23281397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25088057 - 25088015
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  25088057 atactacctaaatagttaagggaccaaaaatgcaatttagcct 25088015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28112762 - 28112720
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  28112762 atactacctaaatagttaagggaccaaaaatgcaatttagcct 28112720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33753266 - 33753224
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  33753266 atactacctaaatagttaagggaccaaaaatgcaatttagcct 33753224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34028762 - 34028720
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  34028762 atactacctaaatagttaagggaccaaaaatgcaatttagcct 34028720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34029066 - 34029108
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  34029066 atactacctaaatagttaagggaccaaaaatgcaatttagcct 34029108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45305754 - 45305796
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  45305754 atactacctaaatagttaagggaccaaaaatgcaatttagcct 45305796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 50118388 - 50118350
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  50118388 atactacctaaatagttaagggaccaaaaatacaattta 50118350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2125547 - 2125600
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattatattt 54  Q
    |||||||||||||| ||||||||| |||||| ||||||  |||||||| |||||    
T  2125547 atactacctaaataattaagggaccaaaaatgtaatttgaccttaattttattt 2125600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51691915 - 51691874
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  51691915 atactacctaaatagttaagggaccaaaaatgcaatttagcc 51691874  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 50921101 - 50921061
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  50921101 atactacctaaatagttaagggaccaaaaatgcaatttagc 50921061  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10625147 - 10625105
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  10625147 atactacctaaatagttaagggaccaaaaatgtaatttagcct 10625105  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10625429 - 10625479
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattata 51  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||| ||||    
T  10625429 atactacctaaatagttaagggaccaaaaatgcaatttagccttaaatata 10625479  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23472634 - 23472592
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  23472634 atactacctaaatagttaagggaccaaaaatacaatttagcct 23472592  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18731060 - 18731008
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaattatatt 53  Q
    |||||| ||||||||||||||||| ||||||  ||||||||| ||||||||||    
T  18731060 atactatctaaatagttaagggaccaaaaatgcaatttagccataattatatt 18731008  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48704153 - 48704193
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagc 41  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  48704153 atactacctaaatagttaagggaccaaaaatatcatttagc 48704193  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31715966 - 31716009
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  31715966 atactacctaaatagttaagggaccaaaaatgcaatttagcctt 31716009  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47250891 - 47250934
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  47250891 atactacctaaatagttaagggaccaaaaatgcaatttagcctt 47250934  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47251241 - 47251284
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctt 44  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  47251241 atactacctaaatagttaagggacaaaaaatgcaatttagcctt 47251284  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9034660 - 9034702
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||    
T  9034660 atactacctaaatagttaaaggaccaaaaatacaatttagcct 9034702  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31715674 - 31715632
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  31715674 atactacctaaatagttaagagacaaaaaatacaatttagcct 31715632  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32706773 - 32706731
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  32706773 atactacctaaatagttaagggaccaaaaatgcaatttagcct 32706731  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35085780 - 35085738
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcct 43  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  35085780 atactacctaaatagttaagggaccaaaaatgcaatttagcct 35085738  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39118051 - 39118013
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataattta 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  39118051 atactacctaaatagttaagggaccaaaaatacaattta 39118013  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11679047 - 11679088
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    ||||||| |||||||||||||||| ||||||| |||||||||    
T  11679047 atactacttaaatagttaagggaccaaaaatacaatttagcc 11679088  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8769627 - 8769671
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcctta 45  Q
    |||||||||||||||||||||||| ||||||  ||||||| ||||    
T  8769627 atactacctaaatagttaagggactaaaaatgcaatttagtctta 8769671  T

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Target: scaffold0809 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4663 - 4710
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagccttaatt 48  Q
    |||||||||||||||||||||||| ||||||  |||||||||| ||||    
T  4663 atactacctaaatagttaagggaccaaaaatgcaatttagcctaaatt 4710  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11832 - 11873
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  11832 atactacctaaatagttaagggaccaaaaatgcaatttagcc 11873  T

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Target: scaffold0051 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40697 - 40738
Alignment:
Q  1 atactacctaaatagttaagggacgaaaaatataatttagcc 42  Q
    |||||||||||||||||||||||| ||||||  |||||||||    
T  40697 atactacctaaatagttaagggaccaaaaatgcaatttagcc 40738  T

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