View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_91 (Length: 283)
Name: NF19878_high_91
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_91 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 8296895 - 8297159
Alignment:
| Q |
1 |
ttcagtttcctttcgtctccatctcatactt--aagtccttgcctacacttgcaatttacactcaagagaccacgctatgcaaaaacctaatggggtcca |
98 |
Q |
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| T |
8296895 |
ttcagtttcctttcgtctccagctcatacttttaagtccttgcctacacttgcaatttacactcaagagaccacactatgcaaaaacctaatggggtcca |
8296994 |
T |
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| Q |
99 |
ttaattattgaatcatacaatttcactcataattaaccgtaannnnnnnnatcaagtagtctaattgctagaattcatttgttttagtggtaaacctgac |
198 |
Q |
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| T |
8296995 |
ttaattattgaatcatacaatttcactcataactaaccgtaa-tttttttatcaagtagtctaattgctagaattcatttgttttagtggtaaacctgac |
8297093 |
T |
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| Q |
199 |
gtggtcgtgcgtttgagcaaacgcttgtattcttagcttcacaaaatggtggtcaagaaggcattg |
264 |
Q |
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| T |
8297094 |
gtggtcgtgcgtttgagcaaaagcttgtattcttagcttcacaaaatggtggtcaaaaaggcattg |
8297159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 33376236 - 33376296
Alignment:
| Q |
204 |
cgtgcgtttgagcaaacgcttgtattcttagcttcacaaaatggtggtcaagaaggcattg |
264 |
Q |
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| T |
33376236 |
cgtgcgtttgagcaaaagcttgtattcttagcttcacaaaatggtggtcaaaaaggcattg |
33376296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 31440823 - 31440735
Alignment:
| Q |
176 |
tttgttttagtggtaaacctgacgtggtcgtgcgtttgagcaaacgcttgtattcttagcttcacaaaatggtggtcaagaaggcattg |
264 |
Q |
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| T |
31440823 |
tttgttttagtggttaacctgatgctgctgtgcggttgcgcaaaaacttgtattcttagcttcacagaatggtggtaaaaaaggcattg |
31440735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 7413694 - 7413782
Alignment:
| Q |
176 |
tttgttttagtggtaaacctgacgtggtcgtgcgtttgagcaaacgcttgtattcttagcttcacaaaatggtggtcaagaaggcattg |
264 |
Q |
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| T |
7413694 |
tttgttatagtggtacatctgacgttgccgtgcgtttgagcaaaagcttgtattcttaacttcacaaaatggtggtaaaaaatgcattg |
7413782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 33684293 - 33684205
Alignment:
| Q |
176 |
tttgttttagtggtaaacctgacgtggtcgtgcgtttgagcaaacgcttgtattcttagcttcacaaaatggtggtcaagaaggcattg |
264 |
Q |
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| T |
33684293 |
tttgttttagtggtaaacttgacgctgccttgcgtttgagcaaaatcttgtattcttaacttcacaaaatagtggtcaaaaaggtattg |
33684205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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