View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_high_93 (Length: 278)
Name: NF19878_high_93
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_93 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 37156095 - 37155899
Alignment:
| Q |
1 |
aagttgcaagcatggctatatattaatgttctgccggatctaaaaatagatcttccatactctattctttcctcgtcatttccgcatctaatttgacaaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37156095 |
aagttgcatgcatggctatatattaatgttctgccggatctaaaaatagatcttccatactctattttttcctcgtcatttccgcatctaatttgacaaa |
37155996 |
T |
|
| Q |
101 |
tgcatagttgttaagcataagccacatgcaatttcatacgtgagaatcaaacactacatgttggtgacattgcatgggaagtacgtaaaactataattat |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37155995 |
tga--------taagcataagccacatgcaatttcatacgtgagaatcaaacactacatgttggtgacattgcatgggaagtacgtaaaactataattat |
37155904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University