View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_94 (Length: 274)
Name: NF19878_high_94
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_94 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: scaffold0171 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 10923 - 11160
Alignment:
| Q |
1 |
tttccaaaaggcttaaagggatgcagaaaaggatggaaacaatgatggagatggcgataagggaccgtcaaaaggaaaggaagaaaataaaggaaaacag |
100 |
Q |
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| T |
10923 |
tttccaaaaggcttaaagggatgcagaaaaggatggaaacaatgatggagatggcgataagggaccgtcaaaaggaaaggaagaaaataaaggaaaacag |
11022 |
T |
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| Q |
101 |
tgaaggttctcatgttagggatcttcttgatattttgttggaaattcatgagaacaataacactgagattgggatcaagttaaacaaggagaatgtcacg |
200 |
Q |
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| T |
11023 |
tgaaggttctcatgttagggatcttcttgatattttgttggaaattcatgagaacaataacactgagattgggatcaagttaaacaaggagaatgtcacg |
11122 |
T |
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| Q |
201 |
agtttcatcgttgtaagcaattttcctaacttccatat |
238 |
Q |
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| T |
11123 |
agtttcatcgttgtaagcaattctcctaacttccatat |
11160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 24529 - 24623
Alignment:
| Q |
57 |
ataagggaccgtcaaaaggaaaggaagaaaataaaggaaaacagtgaaggttctcatgttagggatcttcttgatattttgttggaaattcatga |
151 |
Q |
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| T |
24529 |
ataagggagcatcaagaggaaatgaagaaaagaaaggaaaatggcgaaggtgctcatgttaaggatttgcttgatattttgttggaaattcatga |
24623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 19106 - 19217
Alignment:
| Q |
43 |
tgatggagatggcgataagggaccgtcaaaaggaaaggaagaaaataaaggaaaacagtgaaggttctcatgttagggatcttcttgatattttgttgga |
142 |
Q |
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| T |
19106 |
tgatggagagggtgataagggagcatcaagtggaaatgaagaaaaggaaagaaaagggtgaaggtgatcatgttagggatctacttgatattttgttaga |
19205 |
T |
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| Q |
143 |
aattcatgagaa |
154 |
Q |
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| T |
19206 |
aatgcatgagaa |
19217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 38808749 - 38808606
Alignment:
| Q |
4 |
ccaaaaggcttaaagggatgcagaaaaggatggaaacaatgatggagatggcgataagggaccgtcaaaaggaaaggaagaa-aataaaggaaaacagtg |
102 |
Q |
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| T |
38808749 |
ccaaaaggctttaagggactcagaacagaattgacacaatgatggagagggtgataagggagcatcaagaggaaaggaggaataaggaaggaaagtggtg |
38808650 |
T |
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| Q |
103 |
aaggttctcatgttagggatcttcttgatatttt-gttggaaat |
145 |
Q |
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| T |
38808649 |
aaggtgcttgtgttagggatctgcttgatattttggttggaaat |
38808606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 11168 - 11106
Alignment:
| Q |
82 |
agaaaataaaggaaaacagtgaaggttctcatgttagggatcttcttgatattttgttggaaa |
144 |
Q |
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| T |
11168 |
agaaaagaaaggtaaagggtgaaggtgctcatgatagggatatacttgatattttgttggaaa |
11106 |
T |
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