View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_high_95 (Length: 273)
Name: NF19878_high_95
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_high_95 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 8601117 - 8600971
Alignment:
| Q |
18 |
aaagtaatgaaggatgatggtgttagttccatgcttacttcaatagaaagaatgaagatcaactctgcaatgataaagggaaagaaattgattgatgaaa |
117 |
Q |
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| T |
8601117 |
aaagtaatgaaggatgatagtgttagttccatgcttacttcaatagaaagaatgaagatcaactctgcaatgataaagggaatgaaattgattgatgaaa |
8601018 |
T |
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| Q |
118 |
aacagcatcaagaagcatttatgtttgtggaatttcagagggagcttgaga |
168 |
Q |
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| T |
8601017 |
aacagcatcatgaagcatt----tttgaggactttctgagggagcttgaga |
8600971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 8609063 - 8608847
Alignment:
| Q |
18 |
aaagtaatgaaggatgatggtgttagttccatgcttacttcaatagaaagaatgaagatcaactctgcaatgataaagggaaagaaattgattgatgaaa |
117 |
Q |
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| T |
8609063 |
aaagtaatgaaggatgggagtgttacttccatgcttacctctactgacaaaatgaagctcaatgctgcaatgataaaaggaaagaatttgattgatgaca |
8608964 |
T |
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| Q |
118 |
aacagcatcaagaagcatttatgtttgtggaatttcagagggagcttgagagcatatttgaatcatctttgaagaagatcaataaaggttactctgatga |
217 |
Q |
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| T |
8608963 |
aagagcaacatgaaacatttgtgtttgtggactttctgaaggagcttgagaagatatttgaatctgctttgaacaagattaataaaggttactctgatga |
8608864 |
T |
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| Q |
218 |
gtaaagtgattctgatt |
234 |
Q |
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| T |
8608863 |
ggaaagtgattctgatt |
8608847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 8544779 - 8544560
Alignment:
| Q |
18 |
aaagtaatgaaggatgatggtgttagttccatgcttacttcaatagaaagaatgaagatcaactctgcaatgataaagggaaagaaattgattgatgaaa |
117 |
Q |
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|||||||||||||||||| |||||| ||||| ||| | | |||| | |||||| ||||| |||||||||||||||||||| | ||||||||| | | |
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| T |
8544779 |
aaagtaatgaaggatgattgtgttaattccaagctcgcccctgtagacaaaatgaatatcaattctgcaatgataaagggaaaaagtttgattgataaca |
8544680 |
T |
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| Q |
118 |
aacagcatcaagaagcatttatgtttgtggaatttcagagggagcttgagagcatatttgaatcatctttgaagaagatcaataaaggttactctgatga |
217 |
Q |
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| || || |||| |||||| |||||||||| ||| || ||||||||||||||| |||||||| || |||| |||||||| ||||||| ||||||| |
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| T |
8544679 |
accaacaggaagatgcatttgtgtttgtggactttttgaaggagcttgagagcatctttgaatcttccatgaacaagatcaaccaaggttaatctgatgg |
8544580 |
T |
|
| Q |
218 |
gtaaagtgattctgattctt |
237 |
Q |
| |
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| T |
8544579 |
ggaaagtgatttggattctt |
8544560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 8569404 - 8569237
Alignment:
| Q |
71 |
gaagatcaactctgcaatgataaagggaaagaaattgattgatgaaaaacagcatcaagaagcatttatgtttgtggaatttcagagggagcttgagagc |
170 |
Q |
| |
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|||||||||||| ||||||| |||||||| | ||||||| ||| | ||||| |||| | ||| |||||||||| |||| || ||||||||||||| |
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| T |
8569404 |
gaagatcaactcagcaatgaccaagggaaaaagtttgattggtgatagccagcaagaagatacctttgtgtttgtggactttctgaaggagcttgagagc |
8569305 |
T |
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| Q |
171 |
atatttgaatcatctttgaagaagatcaataaaggttactctgatgagtaaagtgattctgattctta |
238 |
Q |
| |
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|| |||||||| || |||| |||||||| |||||| ||||||||||| |||||||||| |||||||| |
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| T |
8569304 |
atctttgaatctgctatgaacaagatcaacaaaggtgactctgatgagaaaagtgattcggattctta |
8569237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 8383901 - 8384127
Alignment:
| Q |
18 |
aaagtaatgaaggatgatggtgttagttccatgcttacttcaatagaaagaatgaagatcaactctgcaatgataaagggaaagaaattgattgatgaaa |
117 |
Q |
| |
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||||||||||| |||||| |||||| ||| ||||| | ||||||| | ||| |||||||| ||||| ||||| ||||| || | |||||||||| | |
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| T |
8383901 |
aaagtaatgaaagatgatagtgttacttcaatgctcaacccaatagacaaaataaagatcaattctgctatgatgaaggggaaaaggttgattgatggta |
8384000 |
T |
|
| Q |
118 |
aacagcatcaagaagcatttatgtttgtggaatttcagagggagcttgagagcatatttgaatcatctttgaagaagatcaataaaggttactctgatga |
217 |
Q |
| |
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| |||| ||||| ||||| | |||||||| |||| || ||||||||||||||| |||||||| ||| || |||||| | | |||| ||||||||| |
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| T |
8384001 |
acaagcacaaagaaacatttgtatttgtggactttctgatggagcttgagagcatctttgaatctgttttaaacaagatccaaattggttgctctgatga |
8384100 |
T |
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| Q |
218 |
gtaaagtgattctgattcttattgatc |
244 |
Q |
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| T |
8384101 |
ggaaagtgattctgattcttagtgatc |
8384127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 8580789 - 8580656
Alignment:
| Q |
72 |
aagatcaactctgcaatgataaagggaaagaaattgattgatgaaaaacagcatcaagaagcatttatgtttgtggaatttcagagggagcttgagagca |
171 |
Q |
| |
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||||| || |||||||||||||||||||| | ||||||||| | || || || |||| |||||| |||||||||| |||| || |||||||||||||| |
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| T |
8580789 |
aagattaattctgcaatgataaagggaaaaagtttgattgataacaaccaacaggaagatgcatttgtgtttgtggactttctgaaggagcttgagagca |
8580690 |
T |
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| Q |
172 |
tatttgaatcatctttgaagaagatcaataaagg |
205 |
Q |
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| T |
8580689 |
tctttgaatcttccatgaacaagatcaagaaagg |
8580656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 8575305 - 8575202
Alignment:
| Q |
158 |
ggagcttgagagcatatttgaatcatctttgaagaagatcaataaaggttactctgatgagtaaagtgattctgattcttattgatcactttttagttat |
257 |
Q |
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||||||||||||||| |||||||| ||| ||| ||||| || ||||| |||||||||||| ||||||||| | |||| ||||| ||||||||||||| |
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| T |
8575305 |
ggagcttgagagcatctttgaatcttctaagaacaagattaacaaaggctactctgatgaggaaagtgatt-gggttctagttgatgactttttagttat |
8575207 |
T |
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| Q |
258 |
ttcat |
262 |
Q |
| |
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||||| |
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|
| T |
8575206 |
ttcat |
8575202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 8600972 - 8600926
Alignment:
| Q |
188 |
gaagaagatcaataaaggttactctgatgagtaaagtgattctgatt |
234 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
8600972 |
gaagaagaccaataaaggtttctctgatgagtaaagtgattctgatt |
8600926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 243
Target Start/End: Complemental strand, 12527587 - 12527425
Alignment:
| Q |
81 |
tctgcaatgataaagggaaagaaattgattgatgaaaaacagcatcaagaagcatttatgtttgtggaatttcagagggagcttgagagcatatttgaat |
180 |
Q |
| |
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|||||||||||||||||||| | |||||||||| ||| |||| |||| ||||| ||||| |||| ||| || ||||||||||||||| |||| || |
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| T |
12527587 |
tctgcaatgataaagggaaaaagcttgattgatggaaacaagcaggaagatacatttgtgtttttggactttttgaaggagcttgagagcatctttggat |
12527488 |
T |
|
| Q |
181 |
catctttgaagaagatcaataaaggttactctgatgagtaaagtgattctgattcttattgat |
243 |
Q |
| |
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| ||||||| |||||||| ||||||||||| | ||| ||||||||||||||||||| |||| |
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| T |
12527487 |
ctgctttgaataagatcaacaaaggttactccggtgaagaaagtgattctgattcttaatgat |
12527425 |
T |
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