View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_1 (Length: 783)
Name: NF19878_low_1
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 16 - 766
Target Start/End: Complemental strand, 40588177 - 40587410
Alignment:
| Q |
16 |
atgaatcaaaatggttgttggcattgtagttcttctgatttagtcttgaaaatataaatatttcaatttagtctcaactttgaaaatgttttccaaattc |
115 |
Q |
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| T |
40588177 |
atgaatcaaaatggttgttggcattgtagttcttctgatttagtcttgaaaatataaatatttcaatttagtctcaactttgaaaatgttttccaaattc |
40588078 |
T |
|
| Q |
116 |
actcttttttgttaaatgtattgttgacaatcctcatcacaagagaataatataaaacatttgaaattgtaaaataaagagggcattccaaaggtatggg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40588077 |
actcttttttgttaaatgtattgttgacaatcctcatcacaagagaataatataaaacatttgaaattgtaaaataaagagggcattccaaaggtatggg |
40587978 |
T |
|
| Q |
216 |
aaaaggaaattttgtatatttatcaacaatgggattagaaaccaatttttaactgtgaaataactgaatggggacttggtatcaatcaacatgaaacctg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40587977 |
aaaaggaaattttgtatatttatcaacaatgggattagaaaccaatttttaactgtgaaataactgaatggggacttggtatcaatcaacatgaaacctg |
40587878 |
T |
|
| Q |
316 |
tatttccaataaagtggttaacaaataatcagatagatgggtataacagttcaaatataagatgttctgtcttttctcatgatcaagaaatttaaagagt |
415 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40587877 |
tgtttccaataaagtggttaacaaataatcagatagatgggtataacagttcaaatataagatgttctgtcttttctcatgatcaagaaatttaaagagt |
40587778 |
T |
|
| Q |
416 |
atatagac----tatagagcatatnnnnnnngataatgagaagataacgagac-------------acaattccagaccaacaataaaaggaatcatcca |
498 |
Q |
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| T |
40587777 |
atatagacagactatagagcatataaaaaaagagaatgagaagataacgagacaatgtcttgactgatttttccagaccaacaataaaaggaatcatcca |
40587678 |
T |
|
| Q |
499 |
tgagactaacaggaagaaacaaacataatagctgccacggccagagccttgtgaacatgctgaaattaaaaaatgcataatcttccgttttgctcccaac |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40587677 |
tgagactaacaggaagaaacaaacataatagctgccacggccagagccttgtgaacgtgctgaaattaaaaaatgcataatcttccgttttgctcccaac |
40587578 |
T |
|
| Q |
599 |
atcttcttcttagtgaagcctcaaagcacactgcaaatgtcatcatatgagaaatgttattcgaatttcattaggtatgttcccgacaagaaagactaca |
698 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40587577 |
atcttcttcttagtgaagcctcaaagcacactgcaaatgtcatcatatgagaaatgctattcaaatttcattaggtatgttcccgacaagaaagactaca |
40587478 |
T |
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| Q |
699 |
aataactagccatactttgcaaatgccaaatctatagggctttacttcataaatctaccgttagtagt |
766 |
Q |
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| T |
40587477 |
aataactagccatactttgcaaatgccaaatctatagggctttacttcataaatctaccgttagtagt |
40587410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 721
Target Start/End: Complemental strand, 26040412 - 26040296
Alignment:
| Q |
605 |
ttcttagtgaagcctcaaagcacactgcaaatgtcatcatatgagaaatgttattcgaatttcattaggtatgttcccgacaagaaagactacaaataac |
704 |
Q |
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|||||| |||| || |||||||||||||| ||| ||| | ||| | | ||||||| |||||||| | || | ||||| ||| | ||||||| ||||||| |
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| T |
26040412 |
ttcttattgaaaccgcaaagcacactgcagatgccataaagtgaaataagttattctaatttcatcaagtttattcccaacatggaagactaaaaataac |
26040313 |
T |
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| Q |
705 |
tagccatactttgcaaa |
721 |
Q |
| |
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||||||||||||||||| |
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| T |
26040312 |
tagccatactttgcaaa |
26040296 |
T |
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