View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_10 (Length: 603)
Name: NF19878_low_10
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 9 - 586
Target Start/End: Original strand, 3894986 - 3895565
Alignment:
| Q |
9 |
acatcatcataaattcacacatataagtgaaattgaagattttgaatccaaactggagataccacaaaaagtatgcaacttaacaatattgttggcatta |
108 |
Q |
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| T |
3894986 |
acatcaccataaattcacacatataagtgaaattgaagattttgaatccaaacttgagataccacaaaaagtatgcaacttaacaatattgttggcatta |
3895085 |
T |
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| Q |
109 |
tcggttgaactaacaaataattgtttcatctaaaaatcgagctcggttcccgtgtgaaacaaactaaaatgtattttaatttt-taaagctaaaattagt |
207 |
Q |
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| T |
3895086 |
tcggttgaactgacaaataattgattcatttaaaaatcgagctcggtttctgtgtgaaacaacctaaaatgtattttaactttataaagctaaaattagt |
3895185 |
T |
|
| Q |
208 |
gcatgtttgaagannnnnnnn-gtatggttctctcaacctactcttttcaaggatagttatttctttttgaggttaggaccaaaactacgttacatttaa |
306 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895186 |
gcatgtttgaagatttttttttgtaaggttctctcaacctactcttttcaaggatagttatttctttttgaggttaggaccaaaactacgttacatttaa |
3895285 |
T |
|
| Q |
307 |
aattcaattaaccaaagcattgaacttaatcttgaaacgtgatagtattaggaaatatgtggacctcaataagtaacgtaccttgtttccctctaattaa |
406 |
Q |
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| T |
3895286 |
aattcaattaaccaaagcattgaacttaatcttgaaacgtgatagtattaggaaatatgtggacctcaataagtaacgtaccttgtttccctctaattaa |
3895385 |
T |
|
| Q |
407 |
tgaattagtagtaccattaaatagtttggtagattagttaatgataatttgcaaaaatacatgtataaatcaagtccatagaaacacaaacactgaacct |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895386 |
tgaattagtagtaccattaaatagtttggtagattagttaatgataatttgcaaaaatacatgtataaatcaagtccatagaaacacaaacactgaacct |
3895485 |
T |
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| Q |
507 |
tttggaaaaggnnnnnnnggtagcagcaaaaacactaaatatacttgtctctattaaataaggtttatttttgttgacta |
586 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895486 |
tttggaaaaggaaagaaaggtagcaggaaaaacactaaatatacttgtctctattaaataaggtttatttttgttgacta |
3895565 |
T |
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