View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_100 (Length: 262)
Name: NF19878_low_100
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_100 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 73 - 246
Target Start/End: Original strand, 10355775 - 10355948
Alignment:
| Q |
73 |
agaagcttttggtatgtatttgaagcttttgcacatatataacacacacatattgtcattcat--agtgtagtttactcttacgttgaatacatcctgtg |
170 |
Q |
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| T |
10355775 |
agaagcttttagtatgtatatgaagctttttcacatatataacacaca--tattgtcattcatgtagtgtagtttactcttacgttgaatacatactgtg |
10355872 |
T |
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| Q |
171 |
ctttctgactacaatttttgttgcattgaaacttgggggaatataagttctttctgtaatgggggatggtgagaat |
246 |
Q |
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| T |
10355873 |
ctttctgactgcaatttttgttgcattgaaacttgggggaatataagttctttctgtaatgggggatgttgagaat |
10355948 |
T |
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Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 22008737 - 22008562
Alignment:
| Q |
73 |
agaagcttttggtatgtatttgaagcttttgcacatatataacacacacatattgtcattcat--agtgtagtttactcttacgttgaatacatcctgtg |
170 |
Q |
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| T |
22008737 |
agaagcttttagtatgtatatgaagcttttgcacatttacaacacacacatattgtcattcatgtagtgtagtttactcttacattgaatacatactctg |
22008638 |
T |
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| Q |
171 |
ctttctgactacaatttttgttgcattgaaacttgggggaatataagttctttctgtaatgggggatggtgagaat |
246 |
Q |
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| T |
22008637 |
ctttctgactgcaatttttgttgcattgaaacttgggggaatataagttctttgtgtaatggggaatgctgagaat |
22008562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 3124329 - 3124164
Alignment:
| Q |
79 |
ttttggtatgtatttgaagcttttgcacatatataacacacacatattgtcattcat--agtgtagtttactcttacgttgaatacatcctgtgctttct |
176 |
Q |
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| T |
3124329 |
ttttagtatgtatatgaagcttttgcgcatatataacaca----tattgtcattcatgtagcgtagtttactcttatgttgaatatatactgtgctttct |
3124234 |
T |
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| Q |
177 |
gactacaatttttgttgcattgaaacttgggggaatataagttctttctgtaatgggggatggtgagaat |
246 |
Q |
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| T |
3124233 |
gactgcaatttttgttggattgaaacttgtggaaatagaagttctttctgtaatgggggatgctgagaat |
3124164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 50668885 - 50668952
Alignment:
| Q |
171 |
ctttctgactacaatttttgttgcattgaaacttgggggaatataagttctttctgtaatgggggatg |
238 |
Q |
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| T |
50668885 |
ctttctgactgcaatttttgttgtattgaaatttggggatatagaagttctttctgtaatggaggatg |
50668952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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