View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_102 (Length: 257)
Name: NF19878_low_102
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_102 |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 7132246 - 7132351
Alignment:
| Q |
16 |
tcattaacatgtgttcttagggtatttgttagcattgtcgtatttaaattggttttgaagttgtaaaattgatatatgaaagctatatacttttaagtta |
115 |
Q |
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| T |
7132246 |
tcattaacatgtgttcttagggtatttgttagcattgtcgtatttaaattggttttgaagttgtaaaattgatatatgaaagctatatacttttaagtta |
7132345 |
T |
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| Q |
116 |
cgaaaa |
121 |
Q |
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|||||| |
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| T |
7132346 |
cgaaaa |
7132351 |
T |
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Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 7132359 - 7132444
Alignment:
| Q |
167 |
acattttgtatcaagaacttatttttcttataataacgttttggaacagccaacaagtaacatttgtgtttccttcctttgctact |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7132359 |
acattttgtatcaagaacttatttttcttataataacgttttggaacagccaacaagtaacatttgtgtttccttcctttgttact |
7132444 |
T |
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