View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_109 (Length: 250)
Name: NF19878_low_109
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_109 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2509821 - 2509589
Alignment:
| Q |
1 |
ttcattgttaaattttcactaattaaaaaataataattgattacagtagcatggatttaagaataaacaattaacnnnnnnnnnnnnntatgaaacactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2509821 |
ttcattgttaaattttcactaattaaaaaataataattgattacagtagcatggatttaagaataaacaattaacaaaaaagtaaaaatatgaaacactt |
2509722 |
T |
|
| Q |
101 |
gtgcaacaaaagcaaagaaagacagttcacaaagcacttaaacaacccaagtgcaacaaacaacacaaactaattaccttccggaaactacaaactcatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2509721 |
gtgcaacaaaagcaaagaaagacagttcacaaagcacttaaacaacccaagtgcagcaaacaacacaaactaattaccttcccgaaactacaaactcatt |
2509622 |
T |
|
| Q |
201 |
nnnnnnnngtagagcaaaaatgaaacaagatca |
233 |
Q |
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|||||||||||||||||||||||| |
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| T |
2509621 |
aaaaaaaaatagagcaaaaatgaaacaagatca |
2509589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 2513072 - 2512913
Alignment:
| Q |
1 |
ttcattgttaaattttcactaattaaaaaataataa-ttgattacagtagcatggatttaagaataaacaattaac--nnnnnnnnnnnnntatgaaaca |
97 |
Q |
| |
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|||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||| | ||||||| |
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| T |
2513072 |
ttcattgttaaatttttactaattaaaaaataaaaaattgattatagtagcatggatttatgaataaacaattaacaaaaaaaagtaaaattttgaaaca |
2512973 |
T |
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| Q |
98 |
cttgtgcaacaaaagcaaagaaagacagttcacaaagcacttaaacaacccaagtgcaacaa |
159 |
Q |
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||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
2512972 |
cttgtgcaacaaaagtaaataaag--agttcacaaagcacttaaacaacccaagtgcaacaa |
2512913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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