View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_110 (Length: 250)
Name: NF19878_low_110
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 23386922 - 23386775
Alignment:
| Q |
92 |
gcaccgttattttctctctctaaaatctccatgttcctctacttgtgaaatttttggaggagatccgtttctctctctttctctcaccatatttgcattt |
191 |
Q |
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| T |
23386922 |
gcaccgttattttctctctctaaaatctccatgttcctctacttgtgaaatttttggaggagatccgtttctctctctttctctcaccatatttgcattt |
23386823 |
T |
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| Q |
192 |
tcaattttttcacagagnnnnnnnnnncaccattttcaacagattcat |
239 |
Q |
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| T |
23386822 |
tcaattttttcacagagaaaaaaaaaacaccattttcaacagattcat |
23386775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23387013 - 23386960
Alignment:
| Q |
1 |
tcctctctccctgtccttctcttttattaatttcatcatttttttattaatttt |
54 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23387013 |
tcctctctccctgtccttctcttttattaatttcatcatttttttattaatttt |
23386960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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