View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_113 (Length: 247)
Name: NF19878_low_113
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_113 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 44692271 - 44692489
Alignment:
| Q |
15 |
aaaatgaaatcgcaaaagctgtggaagaagaacttgagaaggttcttttttgttttacaattagtatttactatttcctgataaggtgaacggaggattt |
114 |
Q |
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| T |
44692271 |
aaaatgaaatcgcaaaagctgtggaagaagaacgtgagaaggttcttttttgttttacaattagtatttactatttcctgataaggtgaactgaggattt |
44692370 |
T |
|
| Q |
115 |
atataactttgaatcgtctcaacaggctatgcccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacg |
214 |
Q |
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| T |
44692371 |
atataactttgaatcgtcgcaacaggctatgtccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacg |
44692470 |
T |
|
| Q |
215 |
gctatgaatgaaatcaatg |
233 |
Q |
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|| |||||||||||||||| |
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| T |
44692471 |
gccatgaatgaaatcaatg |
44692489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 44632103 - 44632315
Alignment:
| Q |
15 |
aaaatgaaatcgcaaaagctgtggaagaagaacttgagaaggttctt--ttttgtt-ttacaattagtatttactatttcctgataaggtgaacggagga |
111 |
Q |
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| T |
44632103 |
aaaatgaaattgcaaaagctgtggaagaagaacttgagaaggtttttatttttgttattacaattagtatttatt-------gataaggtgaactgaggg |
44632195 |
T |
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| Q |
112 |
tttatataactttgaatcgtctcaacaggctatgcccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaag |
211 |
Q |
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| T |
44632196 |
tttatgtaactttgaataacctcaacaggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgagcatgtgaag |
44632295 |
T |
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| Q |
212 |
acggctatgaatgaaatcaa |
231 |
Q |
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| T |
44632296 |
cgggctatgaatgaaatcaa |
44632315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 44653581 - 44653790
Alignment:
| Q |
15 |
aaaatgaaatcgcaaaagctgtggaagaagaacttgagaaggttcttttttgttttacaattagtatttactatttcctgataaggtgaacggaggattt |
114 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | || |||||| | |||| ||||||| | |||||| |
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| T |
44653581 |
aaaatgaaattgcaaaagctgtggaagaagaacttgagaaggttcttttttgtt--acgaatattatttatt-------gatatggtgaactgtggattt |
44653671 |
T |
|
| Q |
115 |
atataactttgaatcgtctcaacaggctatgcccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacg |
214 |
Q |
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| T |
44653672 |
atgtaactttgaatcatctcaacaggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgtccatgtgaagcgg |
44653771 |
T |
|
| Q |
215 |
gctatgaatgaaatcaatg |
233 |
Q |
| |
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||||||||||||||||||| |
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| T |
44653772 |
gctatgaatgaaatcaatg |
44653790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 44682590 - 44682798
Alignment:
| Q |
15 |
aaaatgaaatcgcaaaagctgtggaagaagaacttgagaaggttcttttttgttttacaattagtatttactatttcctgataaggtgaacggaggattt |
114 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || | ||||| ||||| ||||||| | |||||| |
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| T |
44682590 |
aaaatgaaattgcaaaagctgtggaagaagaacttgagaaggttcttttttgtt--acgat--------attatttattgatatggtgaactgtggattt |
44682679 |
T |
|
| Q |
115 |
atataactttgaatcgtctcaacaggctatgcccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagacg |
214 |
Q |
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|| |||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
44682680 |
atgtaactttgaatcatctcaacaggctatgtcagcttatggatatgaaattgttcaaacactgattactgatatagagccagatgtccatgtgaagcgg |
44682779 |
T |
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| Q |
215 |
gctatgaatgaaatcaatg |
233 |
Q |
| |
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||||||||||||||||||| |
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| T |
44682780 |
gctatgaatgaaatcaatg |
44682798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 44636786 - 44636570
Alignment:
| Q |
15 |
aaaatgaaatcgcaaaagctgtggaagaagaacttgagaaggttctttt-ttgttttacaattagtatttactatttcctgataaggtgaacggaggatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||| | |||| ||||||||||||| ||||||| |
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| T |
44636786 |
aaaatgaaatcgcaaaagctgtggaagaagaacttgagaaggtttttttgttgttttt--attacaattttc-atttgttgataaggtgaactgaggatt |
44636690 |
T |
|
| Q |
114 |
tatataactttgaatcgtctcaacaggctatgcccgcttatggatatgaaattgttcaaacactgattactgatatagagccagatcagcatgtgaagac |
213 |
Q |
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||| |||||||| ||||||| ||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
44636689 |
tatgtaactttggatcgtcttaacaggctatgtcagcttatggctatgaaattgttcaaacactgattgttgatatagagccagacgagcatgtgaaacg |
44636590 |
T |
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| Q |
214 |
ggctatgaatgaaatcaatg |
233 |
Q |
| |
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|||||||||||||||||||| |
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| T |
44636589 |
ggctatgaatgaaatcaatg |
44636570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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