View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_114 (Length: 245)
Name: NF19878_low_114
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_114 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 39237073 - 39236855
Alignment:
| Q |
13 |
aaaatatattccttgaaagtccaaacaaaatataaattcagtagaaatcctgtacaaaatagaccagatcttctgcaaataaacaccctatttaaaacgg |
112 |
Q |
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| T |
39237073 |
aaaatatataccttgaaagtccaaacaaaatataaattcagtagaaatcctgtacaaaatagaccagatcttctgcaaataaacaccctatttaaaacgg |
39236974 |
T |
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| Q |
113 |
acaacatatcagctaacattttagctaacaaaaagcatgcaatttaaatgcactaattgactccagaatccacatgtgaccaacagttgaacagcctatt |
212 |
Q |
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| T |
39236973 |
acaacatatcagctaacattttagctaac-aaaagcatgcaatttaaatgcactaattgactccagaatccacatgtgaccaacagttgaacagcctatt |
39236875 |
T |
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| Q |
213 |
aaaggatggatggacaaaac |
232 |
Q |
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| T |
39236874 |
aaaggatggatggacaaaac |
39236855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 39236839 - 39236770
Alignment:
| Q |
129 |
cattttagctaacaaaaagcatgcaatttaaatgcactaattgactccagaatccacatgtgaccaacagt |
199 |
Q |
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||||||||||||||||| || |||||||| ||||| ||||||||||||||||||| |||||||| |||| |
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| T |
39236839 |
cattttagctaacaaaaggc-tgcaatttgcatgcagcaattgactccagaatccacgtgtgaccagcagt |
39236770 |
T |
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