View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19878_low_116 (Length: 241)

Name: NF19878_low_116
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19878_low_116
NF19878_low_116
[»] chr4 (2 HSPs)
chr4 (1-188)||(53145872-53146063)
chr4 (20-92)||(35221980-35222052)
[»] chr1 (2 HSPs)
chr1 (19-98)||(8461368-8461447)
chr1 (24-89)||(45682540-45682605)
[»] scaffold0024 (1 HSPs)
scaffold0024 (13-99)||(88520-88606)
[»] chr2 (1 HSPs)
chr2 (20-99)||(9253203-9253282)
[»] chr5 (1 HSPs)
chr5 (17-99)||(7952705-7952787)
[»] chr6 (1 HSPs)
chr6 (140-180)||(32322221-32322261)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 53145872 - 53146063
Alignment:
Q  1 ttttcatttatgttt-atctatttgcatatgaattttcaaaatttaaatataagattcgtatgaaagcatagaggaaagaccatatatttaaatattgag 99  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53145872 ttttcatttatgttttatctatttgcatatgaattttcaaaatttaaatataagattcgtatgaaagcatagaggaaagaccatatatttaaatattgag 53145971  T
Q  100 tgattatattccctc---nnnnnnnntattgaatgactataagaaaagaaaattatagattcaaaacttgaaatttcatatgcacatgaact 188  Q
    || ||||||||||||           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53145972 tggttatattccctcaaaaaaaaaattattgagtgactataagaaaagaaaatcatagattcaaaacttgaaatttcatatgcacatgaact 53146063  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 35222052 - 35221980
Alignment:
Q  20 atttgcatatgaattttcaaaatttaaatataagattcgtatgaaagcatagaggaaagaccatatatttaaa 92  Q
    ||||||||||| |||||||   || |||| ||||||||  || ||| |||||| |||||||||||||||||||    
T  35222052 atttgcatatggattttcatgcttcaaatctaagattcacataaaaacatagatgaaagaccatatatttaaa 35221980  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 8461447 - 8461368
Alignment:
Q  19 tatttgcatatgaattttcaaaatttaaatataagattcgtatgaaagcatagaggaaagaccatatatttaaatattga 98  Q
    |||||||||||||||||||||||||  ||| |||||||| || | || |||||| ||||||||||| |||| || |||||    
T  8461447 tatttgcatatgaattttcaaaattctaatctaagattcataggtaatcatagatgaaagaccataaatttgaagattga 8461368  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 45682540 - 45682605
Alignment:
Q  24 gcatatgaattttcaaaatttaaatataagattcgtatgaaagcatagaggaaagaccatatattt 89  Q
    ||||||||||||||||  |||||||||||||||| |||| || ||| || ||||||||||| ||||    
T  45682540 gcatatgaattttcaagctttaaatataagattcatatgcaaacatggatgaaagaccatagattt 45682605  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 88520 - 88606
Alignment:
Q  13 tttatctatttgcatatgaattttcaaaatttaaatataagattcgtatgaaagcatagaggaaagaccatatatttaaatattgag 99  Q
    ||||||||||| |||||||||||||||   | ||||||| ||||| ||||||| |||||| ||||| | |||||||| || ||||||    
T  88520 tttatctatttacatatgaattttcaagcatcaaatatatgattcatatgaaaacatagatgaaagcctatatatttgaagattgag 88606  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 9253203 - 9253282
Alignment:
Q  20 atttgcatatgaattttcaaaatttaaatataagattcgtatgaaagcatagaggaaagaccatatatttaaatattgag 99  Q
    ||||||||||||||||||||   | |||| |||||||  ||| ||| |||||| |||||||||||||||| || ||||||    
T  9253203 atttgcatatgaattttcaagcatcaaatctaagatttatatcaaaacatagatgaaagaccatatatttgaagattgag 9253282  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 7952787 - 7952705
Alignment:
Q  17 tctatttgcatatgaattttcaaaatttaaatataagattcgtatgaaagcatagaggaaagaccatatatttaaatattgag 99  Q
    ||||||||| |||||||||||| | ||| ||||| | |||  |||| || |||| | ||||||||||||||||||| ||||||    
T  7952787 tctatttgcttatgaattttcagatttttaatattatatttatatgcaaacatatatgaaagaccatatatttaaaaattgag 7952705  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 32322221 - 32322261
Alignment:
Q  140 aaaagaaaattatagattcaaaacttgaaatttcatatgca 180  Q
    ||||||||||||||||||  |||||||||| ||||||||||    
T  32322221 aaaagaaaattatagatttgaaacttgaaaattcatatgca 32322261  T

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