View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_117 (Length: 241)
Name: NF19878_low_117
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_117 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26664775 - 26664994
Alignment:
| Q |
1 |
ggtttatttaaattccgctataatgcagtgttataacatcgctggagccgctattcaataacacggtcaatatagggcaccttaacatcatgtgataatc |
100 |
Q |
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| T |
26664775 |
ggtttatttaaattccgctataatgcagtgttataacatcgctggagccgctattcaataacacggtcaatatagggcaccttaacatcatgtgataatc |
26664874 |
T |
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| Q |
101 |
atcgtgcttctgaggaagcaattcatccatgatcaacgatttccgaaacgcatcaacaacagcaggaacaacatcaacagcctgtaactcatcaacacgc |
200 |
Q |
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| T |
26664875 |
atcgtgcttctgaggaagcaattcatccatgatcaacaatttccgaaacgcatcaacaacagcaggaacaacattaacagcctgtaactcatcaacacgc |
26664974 |
T |
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| Q |
201 |
tttttcttgaaagaatgctt |
220 |
Q |
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| T |
26664975 |
tttttcttgaaagaatgctt |
26664994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 26658669 - 26658777
Alignment:
| Q |
59 |
taacacggtcaatatagggcaccttaacatcatgtgataatcatcgtgcttctgaggaagcaattcatccatgatcaacgatttccgaaacgcatcaaca |
158 |
Q |
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||||||| ||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26658669 |
taacacgaccaatatacggcaccttaacatcttatgataatcatcgtgcttctcgggaagcaattcatccatgatcaacgatttccgaaaggcatcaaca |
26658768 |
T |
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| Q |
159 |
acagcagga |
167 |
Q |
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| T |
26658769 |
acagcagga |
26658777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 26643999 - 26644055
Alignment:
| Q |
114 |
ggaagcaattcatccatgatcaacgatttccgaaacgcatcaacaacagcaggaaca |
170 |
Q |
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| T |
26643999 |
ggaagcaattcatcgatgatcaacgattgccgaaaagcatcaacagcagcaggaaca |
26644055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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