View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_12 (Length: 575)
Name: NF19878_low_12
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 559
Target Start/End: Original strand, 47545150 - 47545692
Alignment:
| Q |
12 |
aagaatatccagtgctgaaacttgaaagtgaatcattcttcaaaaccaatgttcaatcaaatcaacaaaaaggttggattcttcaacaatcaccctttaa |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47545150 |
aagaaaatccagtgctgaaacttgaaagtgaatcattcttcaaaaccaatgttcaatcaaatcaacaaaaaggttggattcttcaacaatcaccctttaa |
47545249 |
T |
|
| Q |
112 |
cacattatcaatgttgattcacaaataaaatcaaataaacatgnnnnnnnnnncatatgataccgtggaataaagctgggttaatcttctccttttggat |
211 |
Q |
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| T |
47545250 |
cacatcatcaatgttgattcacaaataaaatcaaataaacatgaaaaaaaaa--atatgataccgtggaataaagctgggttaatcttctccttttggat |
47545347 |
T |
|
| Q |
212 |
gttagaggaaaagggactgaaataatgattatgatcaaagggactnnnnnnnnnnnnnnnnnnnnnnnntaactggcttgtagagattcaaaataacgcg |
311 |
Q |
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||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47545348 |
gttagaggaaaagtgactgacattatgattatgatcaaagggactgaagaaggaagagaagaagaagaataactggcttgtagagattcaaaataacgcg |
47545447 |
T |
|
| Q |
312 |
ggactgatatacatgtggggttaagatgaatatttaggtagaataagtacnnnnnnnattccgtacaagatagagtaagtattatcctctaaacaaaagg |
411 |
Q |
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| T |
47545448 |
ggactgatatacatgtggggttaagatgaatatttaggtagaataagcacttttt---ttccgtacaagatagattaagtattatcctctaaaaaaaagg |
47545544 |
T |
|
| Q |
412 |
atagaataactattatatttccgattatattatctcgaccatatcaacacaaagattgagtttatttgtaaaatagatgatcaatttatgaaccatacta |
511 |
Q |
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| T |
47545545 |
atagagtaactattatatttccgattatattatctcgaccatatcaacacaaagattgagtttatttgtaaaatagatgatcaatttatgaaccatacta |
47545644 |
T |
|
| Q |
512 |
atcattctaacattcatcattgtgtttcagatcattgttagttattcc |
559 |
Q |
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||||||||||||| ||||||||| ||| |||||||||||| ||||||| |
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| T |
47545645 |
atcattctaacatccatcattgtattttagatcattgttaattattcc |
47545692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 561
Target Start/End: Complemental strand, 19031635 - 19031570
Alignment:
| Q |
496 |
tttatgaaccatactaatcattctaacattcatcattgtgtttcagatcattgttagttattcctg |
561 |
Q |
| |
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|||| |||||||||||| ||||||||| | |||| | |||||| || |||||||||||| |||||| |
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| T |
19031635 |
tttaagaaccatactaaccattctaacctacatcctcgtgttttaggtcattgttagttgttcctg |
19031570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 551
Target Start/End: Complemental strand, 51259388 - 51259290
Alignment:
| Q |
453 |
tatcaacacaaagattgagtttatttgtaaaatagatgatcaatttatgaaccatactaatcattctaacattcatcattgtgtttcagatcattgtta |
551 |
Q |
| |
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| T |
51259388 |
tatcaacaaaaatattgagcatatttttaacatagataaccagtttaaggaccatactaatcatcctaaccatcatccttgtgttttagatcattgtta |
51259290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 559
Target Start/End: Complemental strand, 9641090 - 9641024
Alignment:
| Q |
493 |
caatttatgaaccatactaatcattctaacattcatcattgtgtttcagatcattgttagttattcc |
559 |
Q |
| |
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||||||| |||||||| || ||||||||| ||||| |||||||||||| ||||||||||| |||| |
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| T |
9641090 |
caatttaagaaccatatcaaccattctaaccatcatccttgtgtttcagaccattgttagttgttcc |
9641024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 561
Target Start/End: Complemental strand, 37069112 - 37069047
Alignment:
| Q |
496 |
tttatgaaccatactaatcattctaacattcatcattgtgtttcagatcattgttagttattcctg |
561 |
Q |
| |
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|||| ||||||||||||| || ||||| ||| | |||||||| ||||||||||||||| |||||| |
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| T |
37069112 |
tttaagaaccatactaataatcctaaccctcacccttgtgttttagatcattgttagttgttcctg |
37069047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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