View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_124 (Length: 232)
Name: NF19878_low_124
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_124 |
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Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 39555517 - 39555609
Alignment:
| Q |
1 |
agagctaatttgaagattcaaattcaaactttgaagattaatatagtttactaataagaagaaagaaaattattttgacaattgaaaagttgtc |
94 |
Q |
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| T |
39555517 |
agagctcatttgaagattcaaattcaaaatttgaagattaatatagtttactaataataa-aaaaaaaattattttgacaattgaaaagttgtc |
39555609 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 39555668 - 39555710
Alignment:
| Q |
159 |
gtctttaaagttgacacattttggttcaaatggattctcttaa |
201 |
Q |
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| T |
39555668 |
gtctttaaagttgacacattttggttgaaatggattctcttaa |
39555710 |
T |
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