View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_128 (Length: 225)
Name: NF19878_low_128
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_128 |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 3556229 - 3556400
Alignment:
| Q |
19 |
ctatcaagagaaatgtatgagcaaacatcggcattgttcagtaatgtatggcacacgagagtttaaacatgtttatgtttgggtagtgataaatctaaga |
118 |
Q |
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| T |
3556229 |
ctatcaagagaaatgtatgagcaaacatcggcattgttcggtaatgtatggcacac-agagtttaaacatgtttatgttcgggtagcgataaatctatga |
3556327 |
T |
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| Q |
119 |
at-ggaataccattgagcctcgacgtaggtcatcgagaactagaatattagcaagaactctaagtaagttaag |
190 |
Q |
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| T |
3556328 |
atgggaataccatagagcctcgacgtaggtcttcgagaactagtatgttagtatgaaacctaagtaggttaag |
3556400 |
T |
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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 15561600 - 15561677
Alignment:
| Q |
126 |
accattgagcctcgacgtaggtcatcgagaactagaatattagcaagaactctaagtaagttaagttgtgaattgata |
203 |
Q |
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| T |
15561600 |
accatagagcctcgacatagatcgtcgagaactagaatgttagcaagaactctaagtaagttaagctgtgaattgata |
15561677 |
T |
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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 21888636 - 21888772
Alignment:
| Q |
75 |
gagagtttaaacatgtttatgtttgggtagtgataaatctaagaatggaata---ccattgagcctcgacgtaggtcatcgagaactagaatattagcaa |
171 |
Q |
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| T |
21888636 |
gagagtttaagcatgtttat--tcgggtagcgataaa-ctaagagtggagtaaaaccatagagcctcgacatagatcgtcgagaactagaatggtagaaa |
21888732 |
T |
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| Q |
172 |
gaactctaagtaagttaagttgtgaattgataagaataat |
211 |
Q |
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| T |
21888733 |
gaactccaagtaagttaagtcgtgaattgataagtataat |
21888772 |
T |
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Target: scaffold0290 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 5154 - 5265
Alignment:
| Q |
66 |
atggcacacgagagtttaaacatgtttatgtttgggtagtgataaatctaagaatgg-aataccattgagcctcgacgtaggtcatcgagaactagaata |
164 |
Q |
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| T |
5154 |
atggcccaagagagtttaaatatttatatgttcgggtagcgataaacctaagaatggtaatgccatagagcctcgacgtaggtcgtcgagcattagtatg |
5253 |
T |
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| Q |
165 |
ttagcaagaact |
176 |
Q |
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| T |
5254 |
ttagcatgaact |
5265 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 43516425 - 43516506
Alignment:
| Q |
132 |
gagcctcgacgtaggtcatcgagaactagaatattagcaagaactctaagtaagttaagttgtgaattgataagaataatct |
213 |
Q |
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| T |
43516425 |
gagcctcaacatagatcgtcgagaactagaaagttagcaagaaccctaagcaagttaagttgtgaagtgataggcataatct |
43516506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 24057698 - 24057764
Alignment:
| Q |
137 |
tcgacgtaggtcatcgagaactagaatattagcaagaactctaagtaagttaagttgtgaattgata |
203 |
Q |
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| T |
24057698 |
tcgacgtagatcgtcgagaacaagaaagttagcaagaaccctaagcaagttaagtcgtgaattgata |
24057764 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 24540228 - 24540156
Alignment:
| Q |
132 |
gagcctcgacgtaggtcatcgagaa-ctagaatattagcaagaactctaagtaagttaagttgtgaattgata |
203 |
Q |
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| T |
24540228 |
gagcctcgacatagatcgtcgagaaactagaaagttagcaagaaccttaagtaagttaagccgtgaattgata |
24540156 |
T |
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