View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19878_low_13 (Length: 566)
Name: NF19878_low_13
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 12 - 548
Target Start/End: Original strand, 47074685 - 47075235
Alignment:
| Q |
12 |
agcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47074685 |
agcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgtggatcgcatgacaaaatttgcgc |
47074784 |
T |
|
| Q |
112 |
cttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatcta-------- |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47074785 |
cttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatctataaagtat |
47074884 |
T |
|
| Q |
204 |
------gaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagtacatgatttccactgctattgaaatc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47074885 |
gaactagaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagtgcatgatttccactgctattgaaatc |
47074984 |
T |
|
| Q |
298 |
aaaacactcaataagtaacggattatcctgcatagagaaagaaattnnnnnnntgtcagagtaatctatatatgaatatgatgtaacatcagacatgttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47074985 |
aaaacactcaataagtaacggattatcctgcatagagaaagaaattaaaaaaatgtcagagtaatctatatatgaatatgatgtaacatcagacatgttg |
47075084 |
T |
|
| Q |
398 |
caaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtctt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075085 |
caaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtctt |
47075184 |
T |
|
| Q |
498 |
gcaaataggaacagaacctccactctcaacaattcttgatatccttagaaa |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47075185 |
gcaaataggaacagaacctccactctcaacaattcttgatatccttagaaa |
47075235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 373 - 548
Target Start/End: Original strand, 47057258 - 47057434
Alignment:
| Q |
373 |
atatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggattta |
472 |
Q |
| |
|
||||||| |||||| |||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
47057258 |
atatgatttaacattagacatgttgtgttcaaagatcgcaagcttactatacttccaaactgctggaaattaagacaaactggtttccattttggattta |
47057357 |
T |
|
| Q |
473 |
aatt-gttgtctttaacttcagtcttgcaaataggaacagaacctccactctcaacaattcttgatatccttagaaa |
548 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47057358 |
aatttgttgtctataacttcagtcttgcaaataggaacagaacctccactctcaaccattcttgatatccttagaaa |
47057434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 47056763 - 47056896
Alignment:
| Q |
58 |
caatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgctactgatttttg |
157 |
Q |
| |
|
||||||| |||||||||||||| |||||| | ||| ||||||||||||| | ||||||||||| | | ||||||||||||||||||||| || ||| || |
|
|
| T |
47056763 |
caatgaacaccttctcttgtcctttgcgtttggatggcatgacaaaattcacaccttttctctcattgcatagcttttcaaggtctgctattgttttctg |
47056862 |
T |
|
| Q |
158 |
cagtttactgttgccaacaaacattgatgtcact |
191 |
Q |
| |
|
|| ||||||| || |||||||| ||||||||||| |
|
|
| T |
47056863 |
cattttactgatggcaacaaactttgatgtcact |
47056896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 47056945 - 47057031
Alignment:
| Q |
247 |
tataatttgacattaccctataagtacatgatttccactgctattgaaatcaaaacactcaataagtaacggattatcctgcataga |
333 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| || ||| ||||||||||||||||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
47056945 |
tataatttgacattacccgattagtacatgattgccgctgatattgaaatcaaaacactcgataactaatggagtatcctgcataga |
47057031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 46 - 548
Target Start/End: Complemental strand, 18230687 - 18230164
Alignment:
| Q |
46 |
gatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgc |
145 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
18230687 |
gattgcagggatcaatgaacaccttctcttgtccattgcgtgtggatggcatgacaaaatttgcgccttttttttcttggtatagcttttcaaggtctgc |
18230588 |
T |
|
| Q |
146 |
tactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatcta------------------gaaagtgtaaagcctaaagaagtt |
227 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||| ||||||||| ||||||||||||| |||||||||||||||||| | ||| |
|
|
| T |
18230587 |
tactgattttttcagtttactgtcggcaacaaactttgatgtcagtattttgcatctatatatagtatatggactagaaagtgtaaagcctaaaaatgtt |
18230488 |
T |
|
| Q |
228 |
taggctaaacaaaaag----ctatataatttgacattaccctataagtacatgatttccactgctattgaaatcaaaacactcaataagtaacggattat |
323 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| || ||| ||| |
|
|
| T |
18230487 |
taggctaaacgaaaataaaacaatataatttgacattacccgataagtacatgattgccgctgctattgaaatcaaaacactcaataagcaatggagtat |
18230388 |
T |
|
| Q |
324 |
cctgcatagagaaagaaattnnnnnnntgtcagagtaatctatatatgaatatgatgtaacatcagacatgttgcaaataaagatggaaagcttacttta |
423 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||| |||||||||||||| |
|
|
| T |
18230387 |
cctgcatagagaaagaaattaaaaaa-tgtcagagtaatctatatatgaatatggtgtaacatcggacatgttgtgcacaaagatcgaaagcttacttta |
18230289 |
T |
|
| Q |
424 |
cttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtcttgcaaataggaacagaacctccactct |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
18230288 |
cttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctataacttcagtcttgaaaataggaacagttcctccactct |
18230189 |
T |
|
| Q |
524 |
caacaattcttgatatccttagaaa |
548 |
Q |
| |
|
|||| | || ||||||||||||||| |
|
|
| T |
18230188 |
caaccactcgtgatatccttagaaa |
18230164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University