View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_133 (Length: 221)
Name: NF19878_low_133
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_133 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 19224641 - 19224861
Alignment:
| Q |
1 |
aaacccagcttaagtgctaaattatcttgaatttaactaaataaagtagtatatggtcatgatttcgtatatatttggtatcatagtaaatatattagaa |
100 |
Q |
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| T |
19224641 |
aaacctagcttaagtgctaaattatcttgaatttaactaaataaagtagcatatggtcatgatttcgtatatgtttggtaccatagtaaatatattagaa |
19224740 |
T |
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| Q |
101 |
tcgcattgacccatcataatttttcaaaaataatctttaattttcgtaaaatcatagtaggctgtcgtgatagcaaagatagacgtcaactcatccacca |
200 |
Q |
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| T |
19224741 |
tcacattgatccatcataattttttaaaaataatctttaactttcgtaaaatcataataggctgtcgtgataccaaagatagacgtcaactcatccactg |
19224840 |
T |
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| Q |
201 |
acaaaataacagccaatattt |
221 |
Q |
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||||||||| ||||||||||| |
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| T |
19224841 |
acaaaataaaagccaatattt |
19224861 |
T |
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