View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_135 (Length: 208)
Name: NF19878_low_135
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_135 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 11532553 - 11532384
Alignment:
| Q |
20 |
ttgagaaaactgagctacaaatagtaacaaagtcaaacatcgacaaaattgaataaaattcacctggactgagtcgagttcacgtcgccatcgctgtcat |
119 |
Q |
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| T |
11532553 |
ttgagaaaactgagctacaaatagtaacaaagtcaaacatcgacaaaattgaataaaattcacctggactgagtcgagttcacgtcgccatcgctgtcat |
11532454 |
T |
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| Q |
120 |
cactatcgttaccgtcggaactgaattcagcatcactatccctctgcctccgccgcgaatccctcctatt |
189 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
11532453 |
cactatcgttaccgtcggaactgaattcagcatcactctccctctgcctctgccgcgaatccctcctatt |
11532384 |
T |
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