View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_138 (Length: 205)
Name: NF19878_low_138
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_138 |
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| [»] scaffold0004 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 249596 - 249791
Alignment:
| Q |
5 |
ttttcttttacagaaatatgatctacgatttgttaaaataaatatataaataggatcaacgatatatggtttagttataaggattttgaatacaattgaa |
104 |
Q |
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| T |
249596 |
tttttttttacagaaatatgatctacgatttgttaaaataaatatataaataggatcaacgagatatggtttagttataagaattttgaatacaattgta |
249695 |
T |
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| Q |
105 |
aaaatcaaataataataatttctaacaatatacaaaaaggatttttgtcatactaccaaaaaataataaaaatctctaacaatatatcattcatttaaac |
204 |
Q |
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| T |
249696 |
a-----aaataatactaatttctaacaatatacaaaaaggatttttgtcatactaccaaaaaataataaaaatctctaacaatatatcattcatttaaac |
249790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 49349376 - 49349537
Alignment:
| Q |
39 |
aaaataaatatataaataggatcaacgatatatggtttagttataaggattttgaatacaattgaaaaaatcaaataataataatttctaacaatataca |
138 |
Q |
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| T |
49349376 |
aaaaaaaatatataaataggatcaacgatatatggtttagttataaggattttaaatacaattgtaa-----aaataataataatttctaacaatataca |
49349470 |
T |
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| Q |
139 |
aaaaggatttttgtcatactaccaaaaaataataaaaatctctaacaatatatcattcatttaaact |
205 |
Q |
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| T |
49349471 |
aaaaggatttttgtcatactaccaaaaaataataaaaatatctaacaatatatcattcatttaaact |
49349537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 49348479 - 49348534
Alignment:
| Q |
1 |
gaaattttcttttacagaaatatgatctacgatttgttaaaataaatatataaata |
56 |
Q |
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| T |
49348479 |
gaaattttcttttacagaaatatgatctacgatttgttaaaataaatatataaata |
49348534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 167
Target Start/End: Complemental strand, 42201610 - 42201449
Alignment:
| Q |
5 |
ttttcttttacagaaatatgatctacgatttgttaaaataaatatataaatag----gatcaacgatatatggtttagttataaggattttgaatacaat |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||| | | ||| | |||| |||| ||||| ||| |||||| |||||||||| |||| |
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| T |
42201610 |
ttttcttttacagaaatattatctacgatttgttaaaaaaaaaaaaaaaaaaaaaaagatctacgagatatgattttcttataaagattttgaatgcaat |
42201511 |
T |
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| Q |
101 |
tgaaaaaatcaaataataataatttctaacaatatacaaaaaggatttttgtcatactaccaaaaaa |
167 |
Q |
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| T |
42201510 |
tgtaaaaat-----aataataatctctaacaatatataaaaaggatttttgtctttctaccaaaaaa |
42201449 |
T |
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