View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_139 (Length: 201)
Name: NF19878_low_139
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_139 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 5939881 - 5939713
Alignment:
| Q |
20 |
gcaaatacaagtaaagtggcatcacgaagttcatcctacaatgtaaatgtttattaatatgattgcaacaatattttacttttatgttgaaaggaaaagc |
119 |
Q |
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| T |
5939881 |
gcaaatacaagtaaagtggcatcacgaagttcatcctacaatgtaaatgtttattaatatgattgcaacaatattttacttttatgttgaaaggaaaagc |
5939782 |
T |
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| Q |
120 |
atgtattacataaattactagactattaaaagctactaacctcacttagcattctatgaagttcatctc |
188 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5939781 |
atgtattacataaattactagacaattaaaagctactaacctcacttagcattctatgaagttcatctc |
5939713 |
T |
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