View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19878_low_16 (Length: 545)
Name: NF19878_low_16
Description: NF19878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19878_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 216 - 526
Target Start/End: Complemental strand, 38031124 - 38030813
Alignment:
| Q |
216 |
catataccccacaactattgatttaggttcgttcatggactcaaaagttattgattgaattagaaatgattcatcaatttcaacaaaacaaaccttttga |
315 |
Q |
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| T |
38031124 |
catatacctcacaactattaatttaggttcgttcatggactcaaaagttattgattgaattagaaatgattcatcaaattaaacaaaacaaatcatttga |
38031025 |
T |
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| Q |
316 |
ctcaatttttaatcaacaacaccttagctcatgtattcatgggtaataattttagagacgtctccaaaccactatttacaacttccaaccaacaactttt |
415 |
Q |
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| T |
38031024 |
ctcaatttttaatcaacaacaacttagctcatgtattcatgggtgataattttagagacgtctccaaaccactatttacaacttccaaccaacaactttt |
38030925 |
T |
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| Q |
416 |
aacattgtattaacaagaatacaatgaatagagcatatttgtggccatttct-ttttatttattaggataagagtggatgggaggaatgtttgagaattt |
514 |
Q |
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| T |
38030924 |
aacattgtattaacaagaatacaatgaatagagcttatttgtggccatttcttttttatttattaggataagagtggatgggaggaatgtttgagaattt |
38030825 |
T |
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| Q |
515 |
agatgatttgcc |
526 |
Q |
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| T |
38030824 |
agatgatttgcc |
38030813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 510
Target Start/End: Complemental strand, 38031811 - 38031745
Alignment:
| Q |
443 |
atagagcatatttgtggccatttctttttatttattaggataagagtggatgggaggaatgtttgaga |
510 |
Q |
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| T |
38031811 |
atagagcatgtttgtggccgtttctttttgtttattaggaaaagagtggatggg-ggcatgtttgaga |
38031745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38031339 - 38031299
Alignment:
| Q |
1 |
tttcaattatatattaggaccatgatatttgaacagcctca |
41 |
Q |
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| T |
38031339 |
tttcaattatatattaggaccatgatatttgaacaccctca |
38031299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 425
Target Start/End: Complemental strand, 38031946 - 38031883
Alignment:
| Q |
362 |
taattttagagacgtctccaaaccactatttacaacttccaaccaacaacttttaacattgtat |
425 |
Q |
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| T |
38031946 |
taatttcagagacgttgcaaaaccactgtttacaacttccaactaacaacttttaacgttgtat |
38031883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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